Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20melo_20[refseq_20GCF_5F000313045.1_202012-10-05] 31,464 sequences; 374,928,489 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq78 116 3e-21 seq32 104 2e-17 >seq78 Length=1515738 Score = 116 bits (128), Expect = 3e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 |||||||| || || || || ||||||||||||||||| || | || | ||||| Sbjct 1185355 ACCAAATGCAAAGTGGATTCCTTTTGAATATTGTAGTCCGCCAAAGTCCGGCCATCTTCA 1185414 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 || |||||||| ||| |||| || | |||||| || || || | |||||||||||| | Sbjct 1185415 AGTTGTTTACCAGCGAAAATTAGCCTCTGTTGGTCAGGGGGAATACCCTCTTTATCTTGG 1185474 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 ||||| |||| | || | || || | | ||| || |||| || || | ||| Sbjct 1185475 ATCTTAGCCTTCACATTATCGATGGTATCAGAGCTTTCCACCTCTAAGGTGATGGTTTTA 1185534 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || || |||||||| ||||||||||| Sbjct 1185535 CCAGTGAGGGTTTTCACGAAGATTTGCAT 1185563 >seq32 Length=4239389 Score = 104 bits (114), Expect = 2e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTC-GCT 27079 || |||||||| || | || ||||| ||||| || || |||||||| || || || ||| Sbjct 976832 CCACCGCGCAATCGGAGCACTAAATGCAACGTTGATTCCTTTTGAATGTTATAATCTGCT 976891 Query 27080 CATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGG 27139 || || | ||||| ||||| ||||| || |||| | | |||||| ||||| || Sbjct 976892 AGAGTCCTGC-CATCTTCAAGCTGCTTACCAGCAAAAATCAACCTCTGTTGGTCCGGTGG 976950 Query 27140 CACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAAC 27199 | |||||| ||||| |||||| ||||| | || | || || | | || || Sbjct 976951 AATACCCTCCTTATCTTGGATCTTAGCTTTCACATTATCAATTGTATCAGAGCTCTCCAC 977010 Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 ||| | || || | ||| || |||| ||||||||||| ||||||||| Sbjct 977011 TTCCAAGGTAATTGTTTTCCCAGTCAAGGTTTTCACAAAAATTTGCATA 977059 Score = 86.0 bits (94), Expect = 5e-12 Identities = 150/218 (69%), Gaps = 18/218 (8%) Strand=Plus/Plus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 |||||||| | ||||| || || |||||||||||||| | | ||| |||| ||| Sbjct 977078 ACCAAATGCAGAGTAGATTCCTTCTGAATATTGTAGTCAGCGAGAGTCCGCCCGTCCTCG 977137 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 ||||| ||||| || |||| || | |||||| || || || | ||| || || Sbjct 977138 AGCTGCTTACCAGCAAAAATAAGTCTCTGTTGGTCAGGTGGAATACCTTCCTT------- 977190 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGG--------CT-TCAACTTCTAGAGTT 27209 |||||| ||| || || ||| |||| ||| || || || || ||||| Sbjct 977191 GTCTTGTATTTTAGCCTT--GACATTGTCAATGGTATCAGAACTCTCCACCTCAAGAGTG 977248 Query 27210 ATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || | |||||| || || || |||||||| |||||||| Sbjct 977249 ATGGTTTTGCCAGTAAGGGTCTTCACAAATATTTGCAT 977286 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424771451467968