Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20melo_20[refseq_20GCF_5F000313045.1_202012-10-05] 31,464 sequences; 374,928,489 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq29 123 3e-23 seq34 93.3 5e-14 seq59 86.0 8e-12 >seq29 Length=4237707 Score = 123 bits (136), Expect = 3e-23 Identities = 195/277 (70%), Gaps = 2/277 (1%) Strand=Plus/Minus Query 11539 AAAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGG 11598 ||| |||||||| || || | || ||||| || ||||| |||||||||||||| | Sbjct 3793718 AAACCCATCCATTTCAGTCAATAGCTGATTGATCGTTTGCTCTCTCTCATCATTCCCACC 3793659 Query 11599 CATACCACCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATACA 11658 | ||| || | | || | ||||| |||||||||||||||||||| ||||| || Sbjct 3793658 TCCAAGACCTGCCCCTCTCTGTCTCCCCACAGCATCAATCTCATCAATGAAAACAATGCA 3793599 Query 11659 TGGTTGATTTTCGCG-GGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAA 11717 || | ||| | ||| | ||||| | || || || || ||||||||||||| Sbjct 3793598 AGGA-GCTTTGGACTTGGCTTTGTCAAACAAGTCCCGGACTCTCGATGCACCCACACCAA 3793540 Query 11718 CAAACATCTCCACAAAGTTTGCGGCAGAGCACTGGATGAATGGGACATTTGATTCACCCG 11777 |||||| || ||||| | || ||||| || || |||||| || | |||||| | Sbjct 3793539 CAAACAATTCTACAAACTCTGAGGCAGCACAGGAGAAGAATGGCACGCCAGCTTCACCAG 3793480 Query 11778 CGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGG 11814 | | ||| ||||| || || || ||||| ||||| || Sbjct 3793479 CCACGGCCCGGGCCAGAAGAGTTTTTCCGGTACCCGG 3793443 >seq34 Length=3787072 Score = 93.3 bits (102), Expect = 5e-14 Identities = 206/308 (67%), Gaps = 12/308 (4%) Strand=Plus/Minus Query 11483 TCAAGGATATCCACGCGATTAGTGGCCGCAATAACCACAATGCCAGTCTCATTGTCAAAG 11542 ||||| || || | | || ||||| ||||| || | ||| ||||| | || || Sbjct 2304954 TCAAGAATGTCTGCCCTGTTTGTGGCAGCAATTACAATAATCCCAGTGTTTCCCTCGAAC 2304895 Query 11543 CCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGCATA 11602 |||||||| || || || | || |||| ||||||||||| || ||||| | | Sbjct 2304894 CCATCCATTTCAGTCAGAAGCTGGTTAAGTGTTTGTTCTCGTTCGTCATTCCC------A 2304841 Query 11603 CCACCAG---CACTGCGT---TGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATA 11656 |||||| || ||| | || || || |||||||| ||||||| || ||||| Sbjct 2304840 CCACCAATTCCAGTGCCTCTTTGACGTCCAACAGCATCAATTTCATCAACAAACACAATG 2304781 Query 11657 CATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCA 11716 || ||| |||||| ||| | | |||||||| ||||| | ||||| | |||| Sbjct 2304780 CAAGGTGCATTTTCCTTGGCCTTCTTGAAGAGATCACGAACTCGAGAAGCACCAATACCA 2304721 Query 11717 ACAAACATCTCCACAAAGTTTGCGGCAGAGCACTGGATGAATGGGACATTTGATTCACCC 11776 |||||||| || ||||| | | | || || ||||||||| || |||||| Sbjct 2304720 ACAAACATTTCAACAAACTCAGAACCCGATATAGAGAAAAATGGGACACCTGCTTCACCA 2304661 Query 11777 GCGATGGC 11784 || ||||| Sbjct 2304660 GCAATGGC 2304653 >seq59 Length=2086427 Score = 86.0 bits (94), Expect = 8e-12 Identities = 70/84 (83%), Gaps = 1/84 (1%) Strand=Plus/Minus Query 145272 TCAACTAAAAGCTCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCT 145331 ||||||| | ||| || |||||||||| | |||||||||||||||||||||||||| Sbjct 651433 TCAACTAGTGGTTCT-ATGGTGTAGTGGTTAGCACTTTGGACTTTGAATCCAACAACCTG 651375 Query 145332 GGTTCAAATCCAGGTAGGAGCTTT 145355 ||||| | ||| ||||||| |||| Sbjct 651374 GGTTCGACTCCCGGTAGGACCTTT 651351 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627784995014400