Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20melo_20[refseq_20GCF_5F000313045.1_202012-10-05] 31,464 sequences; 374,928,489 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq23 145 9e-30 seq29 125 8e-24 seq34 113 5e-20 >seq23 Length=5684809 Score = 145 bits (160), Expect = 9e-30 Identities = 594/916 (65%), Gaps = 33/916 (4%) Strand=Plus/Plus Query 94343 ACGAACCTCTCCTAGCCCCCACACTAAACAGATTTACTG--TGTTCCCCCTGAAGTATCC 94400 |||| |||||||| ||||| | | | | || ||| ||||||| | | ||||| Sbjct 1472832 ACGAGCCTCTCCTCGCCCCTAACCCCGATCGCTT--CTGCATGTTCCCAATTCAATATCC 1472889 Query 94401 ACACCTCTGGGAACTCTATAAGAAGGCTCAAATGAGTAATT--GGACTGCTGAAGAGGTA 94458 || ||||||| | || ||||| || | | | | || |||| || |||||||| Sbjct 1472890 TCAAATCTGGGAGATGTACAAGAAAGCCCTA--GCCTCCTTCTGGACCGCCGAAGAGGTC 1472947 Query 94459 GATCTCTCAAAGGATTTGGACGATTGGAAGACTCTAAATGAAAATGAAAAGAAATTCATA 94518 ||||||||| | || | | ||||| | | ||| | | || || | ||||| Sbjct 1472948 GATCTCTCACAAGACCTCCGCCATTGGGATTCCTTAACTTCCGACGAGAAACACTTCATC 1473007 Query 94519 AAATACATCCTGGCATTCTTTGCTGGATCCGATGGAATTGTTTTTGAGAATATCAATAAC 94578 | ||| |||| || ||||| || | || ||||| || ||||| ||||| | | | Sbjct 1473008 ACTTACGTCCTTGCCTTCTTCGCCGCCTCTGATGGTATCGTTTTGGAGAACCT---TGCC 1473064 Query 94579 A-ACTTTGC-TGAT-GAGGTGCAATCCTCTGAAGCGAGATCCTTCTATGCGTATCAGTGT 94635 || | | ||| || || ||| | ||||||| ||| ||||||||| | ||| | Sbjct 1473065 GGACGGTTCATGAAAGAAGTCCAAGTCGCTGAAGCCAGAGCCTTCTATGGATTTCAAATT 1473124 Query 94636 CATAATGAAATGGTGCATGGGGAGACATACAGTAAACTCATAGACAAGTATATTAAGGAT 94695 || ||| | | ||| |||| || ||| ||| | || | ||||| |||||| Sbjct 1473125 TGTATTGAGAACATTCATTCTGAGATGTATAGTCTTCTCCTTGAAACTTATATCAAGGAT 1473184 Query 94696 GGTGCTGAGAAGAAGCAGCTCTTTGAAGCCATCCAAACAGTTCCGTGTATTCAAAAGAAA 94755 ||||||||| | ||| ||| | || || | || || || ||| | | ||||| Sbjct 1473185 TCCAGTGAGAAGAATCGGCTGTTTCATGCTATTGATACTGTCCCATGTGTGAAGAAGAAG 1473244 Query 94756 GCGGATTGGGCTATGAAGTGGTTTGATACAAAGTCGCGTTCCTTTGCTGAGCGACTCTTC 94815 || |||||||| |||||||| |||||| | || || ||||||||||| | || Sbjct 1473245 GCCGATTGGGCGTTGAAGTGGATTGATAGCA---CGGACTCATTTGCTGAGCGGATTTTG 1473301 Query 94816 GCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTC 94875 |||||||| || || ||||| || |||||||| ||| |||||| |||||| ||| | Sbjct 1473302 GCATTTGCTTGCGTCGAGGGAATTTTCTTCTCAGGTAGTTTCTGCTCTATTTTCTGGTTG 1473361 Query 94876 AAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAG 94935 || || || || | ||||| || | ||||| ||||| | || || || || || Sbjct 1473362 AAAAAACGTGGGTTAATGCCTGGATTGACGTTCTCAAACGAATTGATTTCACGAGATGAA 1473421 Query 94936 GGACTCCACCAAGAGTTTGC--GGTGGAACTTTTCAAATTATTGCGTATTAAACCAACGA 94993 || || || || ||||| | | | | ||| ||| ||| | | || | || Sbjct 1473422 GGTCTTCATTGTGATTTTGCTTGTTTGTTGTATTC--ATTGTTGAGGAAGAA---ATTGA 1473476 Query 94994 CTGAG--ACTATTCATTC-TATTGTTAAGGAAGCCGTTGAGATTGAGAAAGGATTCATAT 95050 |||| | | | | | ||||||| ||| ||||| || || |||| | |||| | | Sbjct 1473477 GTGAGGATCGAGTGAGGCAGATTGTTACGGAGGCCGTGGATATAGAGAGGGAATTCGTTT 1473536 Query 95051 TGGATGCCCTTCCATGCGCTCTCATCGGTATGAATTCTGAAAAAATGTCTGAATATATTG 95110 ||||| | || ||||| | || |||||| || ||| | |||| |||| Sbjct 1473537 GTGATGCTTTGCCGGTGGCTCTTGTTGGAATGAATGGAGATTTGATGAGTCAATACATTG 1473596 Query 95111 AGTATGTATCTGATAGATT-GTTGAAGCAGATCGGGGTGC-CTCCAATTTGGAA-CTCCA 95167 | | ||| | ||||| || |||| | | || ||||| | ||| | || | || Sbjct 1473597 AATTTGTGGCGGATAGGTTGGTTG--GAACATTGGGGTACGAGAAAATCTATAATGTTCA 1473654 Query 95168 AGAATCCATTTGACTTCATGGAGAACATTAGCCTCGACGGGAAGACAAACTTCTTCGAAA 95227 | || |||||||| | |||||| ||| | | |||||||| || ||||| || | Sbjct 1473655 A-AACCCATTTGATTGGATGGAGTTGATTTCGTTGCAAGGGAAGACTAATTTCTTTGAGA 1473713 Query 95228 AGAGGGTTGGGGACTA 95243 | || |||||||| || Sbjct 1473714 AAAGAGTTGGGGAATA 1473729 >seq29 Length=4237707 Score = 125 bits (138), Expect = 8e-24 Identities = 273/406 (67%), Gaps = 2/406 (0%) Strand=Plus/Minus Query 9613 AAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 9672 ||| |||||||| || ||||| || || || || ||||| || | ||||||||| | Sbjct 3793718 AAACCCATCCATTTCAGTCAATAGCTGATTGATCGTTTGCTCTCTCTCATCATTCCCACC 3793659 Query 9673 CATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCA 9732 | ||| || | | || | ||||| |||||||||||||||||||| || ||||| Sbjct 3793658 TCCAAGACCTGCCCCTCTCTGTCTCCCCACAGCATCAATCTCATCAATGAAAACAATGCA 3793599 Query 9733 TGGTTGATTTTCGCGAGCGACT-TCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAA 9791 || | ||| | | | ||||| | ||||| || | | || |||||||||| Sbjct 3793598 AGGA-GCTTTGGACTTGGCTTTGTCAAACAAGTCCCGGACTCTCGATGCACCCACACCAA 3793540 Query 9792 CAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCACCCG 9851 |||||| || ||||| | || ||| | ||| || ||| || || || |||||| | Sbjct 3793539 CAAACAATTCTACAAACTCTGAGGCAGCACAGGAGAAGAATGGCACGCCAGCTTCACCAG 3793480 Query 9852 CAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTC 9911 | | ||| ||||| |||||||| || || ||||| || || | || || ||| Sbjct 3793479 CCACGGCCCGGGCCAGAAGAGTTTTTCCGGTACCCGGTGGTCCAACAAGAAGACACCCTT 3793420 Query 9912 GTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCACAATTT 9971 ||| || || || ||| | ||| | ||||| | ||| | ||||| |||| || Sbjct 3793419 TTGGGATTTTAGCTCCAAGAGCTGTGTACTTATCAGGATTCTTCAAGAAATCAACAACTT 3793360 Query 9972 CTTCCAATTCATCTTTGGCGGCGTCAATCCCCTCAACATCGGTAAA 10017 ||| ||||||| ||||| |||| || ||||||| | ||| Sbjct 3793359 CTTGCAATTCAAGCTTGGCTTGGTCAGCTCCAGCAACATCAGCAAA 3793314 >seq34 Length=3787072 Score = 113 bits (124), Expect = 5e-20 Identities = 282/421 (67%), Gaps = 22/421 (5%) Strand=Plus/Minus Query 9557 TCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACC--TGTTTCATTATCAA 9614 ||||| || || | | || || || || || |||| ||| || |||||| | | | Sbjct 2304954 TCAAGAATGTCTGCCCTGTTTGTGGCAGCAATTACAATAATCCCAGTGTTTCCCT--CGA 2304897 Query 9615 AACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCA 9674 | |||||||| || |||| ||| ||||||| |||||||| ||||| |||||| | Sbjct 2304896 ACCCATCCATTTCAGTCAGAAGCTGGTTAAGTGTTTGTTCTCGTTCGTCATTCCC----- 2304842 Query 9675 TACCACCAG---CACTGCGT---TGCTTTCCCACGGCATCAATCTCATCAATGAAGACGA 9728 ||||||| || ||| | || ||| || |||||||| ||||||| || || | Sbjct 2304841 -ACCACCAATTCCAGTGCCTCTTTGACGTCCAACAGCATCAATTTCATCAACAAACACAA 2304783 Query 9729 TGCATGGTTGATTTTCGCGAGCGACTTCA--AAGAGATCCCGTACACGCTTGGCGCCCAC 9786 |||| ||| |||||| || |||| |||||||| || || || || || | Sbjct 2304782 TGCAAGGTGCATTTTCCTTGGC--CTTCTTGAAGAGATCACGAACTCGAGAAGCACCAAT 2304725 Query 9787 ACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATT 9845 |||||||||||| || ||||| | | | | | || | || || |||||| | || Sbjct 2304724 ACCAACAAACATTTCAACAAACTCAGAACCCG-ATATAGAGAAAAATGGGACACCTGCTT 2304666 Query 9846 CACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGG 9905 |||| |||||||| ||| || | ||| || || || || || ||| | ||||| Sbjct 2304665 CACCAGCAATGGCCTTGGCTAGCAAAGTTTTCCCAGTTCCAGGAGGACCAACAAGGAGAA 2304606 Query 9906 CACCTCGTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCA 9965 ||||| ||||| || ||| || | | ||||| || | |||||| || |||| Sbjct 2304605 CACCTTTAGGAATGCGAGCTCCAACAGCAGTGAACCTCTCGGGCTTCTTAAGGAACTCCA 2304546 Query 9966 C 9966 | Sbjct 2304545 C 2304545 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583031403527360