Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20melo_20[refseq_20GCF_5F000313045.1_202012-10-05] 31,464 sequences; 374,928,489 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq23 114 1e-20 >seq23 Length=5684809 Score = 114 bits (126), Expect = 1e-20 Identities = 355/542 (65%), Gaps = 8/542 (1%) Strand=Plus/Plus Query 59593 TGTATAAGAAAGCGATCGGTTCATTCTGGTCCGTCGAGGAGATTGACCTCGCCGGAGACC 59652 |||| |||||||| | | || |||||| ||| ||| ||| | || ||| | ||||| Sbjct 1472904 TGTACAAGAAAGCCCTAGCCTCCTTCTGGACCGCCGAAGAGGTCGATCTCTCACAAGACC 1472963 Query 59653 TGAAGGATTGGGACAAGCTCAATTACGACGAGCAGCATTTCATCAAGATGGTCCTGGCCT 59712 | ||||||| | | || ||||||| | || ||||||| ||||| |||| Sbjct 1472964 TCCGCCATTGGGATTCCTTAACTTCCGACGAGAAACACTTCATCACTTACGTCCTTGCCT 1473023 Query 59713 TCTTCGCGGCGAGTGATGGAATTGTGATGGAAAATATAGACATGAACTTTTCC--AAGGA 59770 ||||||| || |||||| || || |||| || | | | | || ||| || || Sbjct 1473024 TCTTCGCCGCCTCTGATGGTATCGTTTTGGAGAACCTTGCC--GGACGGTTCATGAAAGA 1473081 Query 59771 TGTCCAGATTGCCGAGGCCCGGTCGTTCTACGCGTATCAGTCGTTCAACGAGTCTATCCA 59830 ||||| | || || ||| | | ||||| | | ||| | | ||| || || Sbjct 1473082 AGTCCAAGTCGCTGAAGCCAGAGCCTTCTATGGATTTCAAATTTGTATTGAGAACATTCA 1473141 Query 59831 CTCCGAGACGTACTCGCTCATGATCGATAAGTTGGTCAAGGATCCGGAAGAGAAGGCTGG 59890 || |||| ||| || | | || | | |||||||| | |||||| | | Sbjct 1473142 TTCTGAGATGTATAGTCTTCTCCTTGAAACTTATATCAAGGATTCCAGTGAGAAGAATCG 1473201 Query 59891 TCTGTTCCGTGCCATAGAGAC-GTCCCCCGCAGTTAAACAAAAAGCAGAATGGGCCATGC 59949 ||||| | ||| || || || ||||| | || || | || || || ||||| || Sbjct 1473202 GCTGTTTCATGCTATTGATACTGTCCCATGT-GTGAAGAAGAAGGCCGATTGGGCGTTGA 1473260 Query 59950 AGTGGAT-GAGTCCTGGAGCATCATTTGCACAACGTCTCATAGCTTTTGCATGCGTGGAA 60008 ||||||| || | | | |||||||| | || | | || ||||| ||||| || Sbjct 1473261 AGTGGATTGATAGCACGGAC-TCATTTGCTGAGCGGATTTTGGCATTTGCTTGCGTCGAG 1473319 Query 60009 GGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATG 60068 ||||| |||||||| || ||||| ||||||||||| | ||||| ||||| | ||| Sbjct 1473320 GGAATTTTCTTCTCAGGTAGTTTCTGCTCTATTTTCTGGTTGAAAAAACGTGGGTTAATG 1473379 Query 60069 CCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAGGGCCTCCATCAGGAGTTT 60128 || || ||| ||||| ||||| ||||||| || || || || || ||| || ||| Sbjct 1473380 CCTGGATTGACGTTCTCAAACGAATTGATTTCACGAGATGAAGGTCTTCATTGTGATTTT 1473439 Query 60129 GC 60130 || Sbjct 1473440 GC 1473441 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548309065196160