Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20melo_20[refseq_20GCF_5F000313045.1_202012-10-05] 31,464 sequences; 374,928,489 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq21 87.8 2e-12 seq45 86.0 7e-12 seq22 86.0 7e-12 seq3 84.2 2e-11 seq71 82.4 8e-11 seq16 82.4 8e-11 >seq21 Length=5552556 Score = 87.8 bits (96), Expect = 2e-12 Identities = 65/75 (87%), Gaps = 1/75 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 1801859 TGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 1801800 Query 79684 TGAGCTACGAAAGCA 79698 ||||||| ||||||| Sbjct 1801799 TGAGCTATGAAAGCA 1801785 >seq45 Length=3181705 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||| ||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 898971 TGCTCTCGTTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 898912 Query 79684 TGAGCTACGAAAGC 79697 |||||||||| ||| Sbjct 898911 TGAGCTACGAGAGC 898898 Score = 84.2 bits (92), Expect = 2e-11 Identities = 65/76 (86%), Gaps = 1/76 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||| ||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 897791 TGCTCTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 897732 Query 79684 TGAGCTACGAAAGCAA 79699 |||||||||| ||||| Sbjct 897731 TGAGCTACGAGAGCAA 897716 >seq22 Length=5416867 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||| ||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 521212 TGCTCTCGTTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 521153 Query 79684 TGAGCTACGAAAGC 79697 |||||||||| ||| Sbjct 521152 TGAGCTACGAGAGC 521139 >seq3 Length=9040196 Score = 84.2 bits (92), Expect = 2e-11 Identities = 65/76 (86%), Gaps = 1/76 (1%) Strand=Plus/Plus Query 79623 ACTGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCA 79681 ||||||||| |||| | || |||| ||||||||||||||||||||||||||| |||| Sbjct 7155227 ACTGCTTTCATTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCA 7155286 Query 79682 ATTGAGCTACGAAAGC 79697 | ||||||| |||||| Sbjct 7155287 ACTGAGCTATGAAAGC 7155302 >seq71 Length=1858389 Score = 82.4 bits (90), Expect = 8e-11 Identities = 64/75 (85%), Gaps = 1/75 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||| ||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 1602300 TGCTCTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 1602241 Query 79684 TGAGCTACGAAAGCA 79698 |||||||||| |||| Sbjct 1602240 TGAGCTACGAGAGCA 1602226 >seq16 Length=5655878 Score = 82.4 bits (90), Expect = 8e-11 Identities = 64/75 (85%), Gaps = 1/75 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||| ||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 4654900 TGCTCTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 4654841 Query 79684 TGAGCTACGAAAGCA 79698 |||||||||| |||| Sbjct 4654840 TGAGCTACGAGAGCA 4654826 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547000779947200