Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20melo_20[refseq_20GCF_5F000313045.1_202012-10-05] 31,464 sequences; 374,928,489 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq32 150 1e-31 seq78 134 9e-27 seq1 116 2e-21 seq39 107 1e-18 >seq32 Length=4239389 Score = 150 bits (166), Expect = 1e-31 Identities = 150/192 (78%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 34516 TCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAAT 34575 |||||||||||||||||||||| || || | | |||||||| || ||||| ||||| Sbjct 976868 TCCTTTTGAATGTTATAATCTGCTAGAGTCCTGCCATCTTCAAGCTGCTTACCAGCAAAA 976927 Query 34576 ATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT 34635 || || | |||||||||||| || | |||||||| ||| |||| || | ||| || | Sbjct 976928 ATCAACCTCTGTTGGTCCGGTGGAATACCCTCCTTATCTTGGATC-TTAGCTTTCACATT 976986 Query 34636 A-AAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCAC 34694 | |||||| || |||||||||||||| ||| || ||||| || || || |||||||| Sbjct 976987 ATCAATTGTATCAGAGCTCTCCACTTCCAAGGTAATTGTTTTCCCAGTCAAGGTTTTCAC 977046 Query 34695 AAAAATCTGCAT 34706 |||||| ||||| Sbjct 977047 AAAAATTTGCAT 977058 Score = 113 bits (124), Expect = 3e-20 Identities = 153/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 34497 CACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTC 34556 |||||||||||| || |||||||| || || ||||| | ||| ||||| |||| || Sbjct 977305 CACCAAATGGAGTGTAGATTCCTTTTGGATATTGTAATCGGCAAGCGTTCGGCCGTCCTC 977364 Query 34557 AAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGT 34616 |||||| ||||| ||||| || | | ||||||||| || || | ||||| || ||| | Sbjct 977365 AAGTTGCTTACCAGCAAAGATAAGCCTCTGTTGGTCGGGTGGAATGCCCTCTTTATCT-T 977423 Query 34617 GATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTT 34675 || |||| ||||| | |||||| || ||| ||||| || | ||| || |||| Sbjct 977424 GAATCTTTGCCTTAACATTGTCAATTGTATCAGAGCTTTCCACCTCGAGGGTGATTGTTT 977483 Query 34676 TACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 | || || | ||||| || || || ||||| Sbjct 977484 TGCCAGTGAGAGTTTTTACGAATATTTGCAT 977514 >seq78 Length=1515738 Score = 134 bits (148), Expect = 9e-27 Identities = 169/228 (74%), Gaps = 3/228 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | ||||||||||||||| |||||||| ||||||||||||||||| || | Sbjct 1184882 CCTCCACGAAGACGCAACACCAAGTGGAGAGTTGATTCCTTTTGAATGTTATAGTCGGCT 1184941 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || | | ||||| | ||| ||||| || || || || | ||||||||| || || Sbjct 1184942 AGAGTCCTACCATCTTCCAATTGCTTACCAGCGAAAATCAATCTCTGTTGGTCTGGTGGG 1185001 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATA-AAATTGTGTCTTCGCTCTCCAC 34658 | || || || ||| ||| || | ||||| || |||||| ||| ||||| || Sbjct 1185002 ATCCCTTCTTTATCT-TGAATCTTAGCCTTAACATTATCAATTGTATCTGAACTCTCAAC 1185060 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||||| || || ||||| || ||||| |||||||||||||| ||||| Sbjct 1185061 TTCCAAAGTGATTGTTTT-CCCGTTAAAGTTTTCACAAAAATTTGCAT 1185107 Score = 120 bits (132), Expect = 2e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | |||||| | ||| | || |||||| |||||||||||||| ||||| | Sbjct 1185109 CCACCACGAAGACGGAGCACAAGGTGAAGAGTGGATTCCTTTTGAATGTTGTAATCGGCT 1185168 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 ||||| || | ||||| || || || || ||||| || || | ||| |||||||| || Sbjct 1185169 AGTGTCCGTCCATCTTCGAGCTGCTTGCCTGCAAAGATCAACCTCTGCTGGTCCGGGGGA 1185228 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATA-AAATTGTGTCTTCGCTCTCCAC 34658 ||||||||||||||| ||| || | ||| || || |||||||| ||| || || Sbjct 1185229 ACTCCCTCCTTGTCT-TGAATCTTAGCTTTGACATTATCGATTGTGTCAGAGCTTTCAAC 1185287 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || | || || ||||| || || | ||||| || ||||| ||||| Sbjct 1185288 CTCTAATGTAATAGTTTTCCCCGTAAGTGTTTTGACGAAAATTTGCAT 1185335 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | |||||| | ||||||||| | |||| ||||||||||| || || || | Sbjct 1185337 CCACCACGAAGACGAAGCACCAAATGCAAAGTGGATTCCTTTTGAATATTGTAGTCCGCC 1185396 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | || || | ||||||||||||||||| || || |||| | ||||||||| || || Sbjct 1185397 AAAGTCCGGCCATCTTCAAGTTGTTTACCAGCGAAAATTAGCCTCTGTTGGTCAGGGGGA 1185456 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATA-AAATTGTGTCTTCGCTCTCCAC 34658 | ||||| || ||| |||| || | || || || || || || ||| ||||| Sbjct 1185457 ATACCCTCTTTATCTTGGATC-TTAGCCTTCACATTATCGATGGTATCAGAGCTTTCCAC 1185515 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || | ||| || |||||||| || | |||||||| || || ||||| Sbjct 1185516 CTCTAAGGTGATGGTTTTACCAGTGAGGGTTTTCACGAAGATTTGCAT 1185563 Score = 107 bits (118), Expect = 1e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | |||||| | || | ||||| ||| ||||||||||||||| ||||| | Sbjct 1184654 CCACCACGAAGACGAAGGACAAGGTGGAGGGTGGACTCCTTTTGAATGTTGTAATCGGCC 1184713 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | ||| || | || || | |||||| || || || || | | || ||||| || || Sbjct 1184714 AATGTACGTCCATCCTCCAATTGTTTTCCAGCGAAAATGAGTCTTTGCTGGTCAGGAGGG 1184773 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATA-AAATTGTGTCTTCGCTCTCCAC 34658 | ||||||||||| ||| ||| | |||||| || ||| |||||| |||||| || Sbjct 1184774 ATACCCTCCTTGTCCTGGAT-TTTAGCCTTAACGTTATCAATGGTGTCTGAGCTCTCAAC 1184832 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||| || || || || || || || || |||||||| || ||||| Sbjct 1184833 CTCCAATGTGATTGTCTTTCCTGTCAAGGTCTTCACAAATATTTGCAT 1184880 >seq1 Length=8341428 Score = 116 bits (128), Expect = 2e-21 Identities = 143/193 (74%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 34515 CTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAA 34574 |||||| |||||||||||||| | ||| || | | |||||||| ||||| |||||||| Sbjct 3816524 CTCCTTCTGAATGTTATAATCAGCAAGGGTCCTTCCATCTTCAAGCTGTTTCCCGGCAAA 3816583 Query 34575 TATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGA 34634 || || | ||| ||||| || || | |||||||||||| ||| ||||| ||| ||| Sbjct 3816584 GATCAACCTCTGCTGGTCTGGTGGAATTCCCTCCTTGTC-CTGAATTTTTGCTTTCACGT 3816642 Query 34635 T-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCA 34693 | ||||| || |||||||| |||| || || || || || || || || || | Sbjct 3816643 TGTCGATTGTATCAGAACTCTCCACCTCCAAAGTGATGGTCTTTCCAGTCAAGGTCTTAA 3816702 Query 34694 CAAAAATCTGCAT 34706 | || |||||||| Sbjct 3816703 CGAAGATCTGCAT 3816715 Score = 89.7 bits (98), Expect = 3e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || || ||||| | || | || || ||| ||||||||||||||| || || | | Sbjct 3816717 CCTCCCCTCAGACGGAGAACAAGGTGAAGGGTGGACTCCTTTTGAATGTTGTAGTCAGCA 3816776 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || | | || || || || || ||||| || || || | ||| ||||| || || Sbjct 3816777 AGAGTCCTTCCATCCTCCAGCTGCTTTCCGGCGAAGATCAACCTCTGCTGGTCTGGGGGA 3816836 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | || ||||| ||| ||| ||||| |||||| | ||| || || |||||| || Sbjct 3816837 ATGCCTTCCTTATCT-TGAATTTTTGCCTTAACGTTGTCAATGGTATCGGAGCTCTCGAC 3816895 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || | ||| || || || || || || || || || || |||||||| Sbjct 3816896 CTCGAGGGTAATTGTCTTCCCAGTCAAAGTCTTGACGAATATCTGCAT 3816943 Score = 89.7 bits (98), Expect = 3e-13 Identities = 157/222 (71%), Gaps = 5/222 (2%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||||||||| | |||||| || |||||| || ||||| ||||||| ||| ||||| Sbjct 3816954 AGACGCAACACAAGATGGAGGGTCGACTCCTTCTGGATGTTGTAATCTGCAAGAGTTCGG 3817013 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACT-CCCTC 34607 | ||||| | ||||| || || || || | | ||| ||||| || || | | || || Sbjct 3817014 CCATCTTCCAACTGTTTCCCAGCGAAGATAAGTCTCTGCTGGTCTGGGGGGAATGCCTTC 3817073 Query 34608 CTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGG 34666 |||||| ||| || | || ||| | ||||||||| ||| || |||| || Sbjct 3817074 CTTGTC-CTGAATCTTAGCCTTCACGTTGTCAATTGTGTCAGAAGACTCAACCTCCAAGG 3817132 Query 34667 TTATCGTTTTACCGGTTA-ACGTTTTCAC-AAAAATCTGCAT 34706 | || || || ||||| | | |||| || |||||| ||||| Sbjct 3817133 TGATGGTCTTCCCGGTGAGAGTTTTTGACAAAAAATTTGCAT 3817174 >seq39 Length=3648736 Score = 107 bits (118), Expect = 1e-18 Identities = 104/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || ||||| | ||| ||||| || || || ||||||||||||||||||||||| | Sbjct 1061503 CCTCCCCTAAGCCTCAAAACCAAGTGAAGGGTTGACTCCTTTTGAATGTTATAATCTGCA 1061562 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || ||||| | ||||| | ||| ||||| ||||| ||||| | ||| ||||| || || Sbjct 1061563 AGCGTTCGACCATCTTCCAATTGCTTACCAGCAAAAATTAATCTCTGCTGGTCAGGAGGA 1061622 Query 34600 ACTCCCTCCTTGTC 34613 | || |||||||| Sbjct 1061623 ATACCTTCCTTGTC 1061636 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314608911427112