Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20melo_20[refseq_20GCF_5F000313045.1_202012-10-05] 31,464 sequences; 374,928,489 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq78 96.9 2e-15 >seq78 Length=1515738 Score = 96.9 bits (106), Expect = 2e-15 Identities = 161/233 (69%), Gaps = 10/233 (4%) Strand=Plus/Minus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 |||||||||||| || ||||| ||||| |||||| ||||||| | || || |||||| | Sbjct 1185336 AATGCAAATTTTCGTCAAAACACTTACGGGGAAAACTATTACATTAGAGGTTGAAAGCTC 1185277 Query 27849 CGACGATGTACAATCG-----GTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATG 27903 ||| ||||||| |||||| || || ||||| || || ||||| | Sbjct 1185276 TGAC-----ACAATCGATAATGTCAAAGCTAAGATTCAAGACAAGGAGGGAGTTCCCCCG 1185222 Query 27904 GAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGAT 27963 || ||||| |||| || ||||| || || || | || || | ||| | | ||||| Sbjct 1185221 GACCAGCAGAGGTTGATCTTTGCAGGCAAGCAGCTCGAAGATGGACGGACACTAGCCGAT 1185162 Query 27964 TACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||||||| ||||| || |||| | || | || | ||| | ||||| || Sbjct 1185161 TACAACATTCAAAAGGAATCCACTCTTCACCTTGTGCTCCGTCTTCGTGGTGG 1185109 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| |||||||||||||| || || ||| || || |||| || ||||| | Sbjct 1185791 ATGCAAATCTTTGTGAAAACTCTCACCGGAAAAACAATAACCCTTGAGGTTGAAAGTTCT 1185732 Query 27850 GACGATGT--ACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| | | ||||| || || ||||| || || ||||| | || || | Sbjct 1185731 GACACTATCGACAAT--GTAAAGGCCAAAATTCAAGATAAGGAAGGAATCCCTCCAGACC 1185674 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 ||||| || | ||||| || ||||| ||| | || || | || | | | | ||||||| Sbjct 1185673 AGCAAAGGCTTATTTTCGCTGGAAAGCAACTTGAGGATGGTCGAACCCTCGCTGATTACA 1185614 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||| |||||||| || | || |||||| | ||||| ||||| || Sbjct 1185613 ACATACAAAAAGAATCAACCCTTCACTTGGTTCTCCGTTTACGTGGTGG 1185565 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355725938335128