Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20melo_20[refseq_20GCF_5F000313045.1_202012-10-05] 31,464 sequences; 374,928,489 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq32 100 2e-16 seq1 100 2e-16 >seq32 Length=4239389 Score = 100 bits (110), Expect = 2e-16 Identities = 154/216 (71%), Gaps = 8/216 (4%) Strand=Plus/Plus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 ||||||||| || || || ||||| ||||| ||||||||||| ||||| |||| || Sbjct 977305 CACCAAATGGAGTGTAGATTCCTTTTGGATATTGTAATCGGCAAGCGTTCGGCCGTCCTC 977364 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 ||| || || || ||||| ||||| | ||| ||||||| || | || |||||| | | | Sbjct 977365 AAGTTGCTTACCAGCAAAGATAAGCCTCTGTTGGTCGGGTGGAATGCCCTCTTTAT-CTT 977423 Query 39195 GATTTTCTGTTTGAGCGTCG-CCACCGTATC---GCTCGACTCCACGTCCACCGTGATAC 39250 || | | || | | | | | | | ||||| ||| ||||| || | ||||| Sbjct 977424 GAATCTTTGCCTTAACATTGTCAATTGTATCAGAGCT---TTCCACCTCGAGGGTGATTG 977480 Query 39251 TTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCT 39286 |||| || || || ||||| || || |||||||||| Sbjct 977481 TTTTGCCAGTGAGAGTTTTTACGAATATTTGCATCT 977516 >seq1 Length=8341428 Score = 100 bits (110), Expect = 2e-16 Identities = 139/192 (72%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 39094 TCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAAT 39153 || || |||||||| ||||||||||| ||||| |||| ||||| || || || || || Sbjct 3817652 TCCTTCTGTATATTGTAATCGGCAAGGGTTCGGCCGTCCTCAAGTTGCTTTCCAGCGAAG 3817711 Query 39154 ATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTC 39213 || ||||| |||||||| | ||| | | || || ||| ||| | | | || | ||| Sbjct 3817712 ATGAGACGTTGCTGGTCCGGGGGAATTCCTTCCTTATCC-TGAATCTTGGCTTTAACGTT 3817770 Query 39214 G-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAAC 39272 | | | || ||| |||||||| || | ||||| | ||||| || || ||||| || Sbjct 3817771 GTCAATAGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTTCCGGTAAGTGTTTTTAC 3817830 Query 39273 AAAGATTTGCAT 39284 |||||| ||||| Sbjct 3817831 AAAGATCTGCAT 3817842 Score = 89.7 bits (98), Expect = 4e-13 Identities = 137/193 (71%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 39093 CTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAA 39152 ||| || || || |||||||| ||||| || | | | || ||||||||||| || ||||| Sbjct 3816524 CTCCTTCTGAATGTTATAATCAGCAAGGGTCCTTCCATCTTCAAGCTGTTTCCCGGCAAA 3816583 Query 39153 TATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGT 39212 || | | ||||||||| | || | | ||| |||||| ||| ||| || || ||| Sbjct 3816584 GATCAACCTCTGCTGGTCTGGTGGAATTCCCTCCTTGTCC-TGAATTTTTGCTTTCACGT 3816642 Query 39213 CG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAA 39271 | | | ||||| |||||| |||| ||||| | ||||| |||| || |||| Sbjct 3816643 TGTCGATTGTATCAGAACTCTCCACCTCCAAAGTGATGGTCTTTCCAGTCAAGGTCTTAA 3816702 Query 39272 CAAAGATTTGCAT 39284 | ||||| ||||| Sbjct 3816703 CGAAGATCTGCAT 3816715 Score = 86.0 bits (94), Expect = 5e-12 Identities = 140/199 (70%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 39093 CTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAA 39152 |||||| || || || || |||||||| ||||| | || ||||| || ||||| || || Sbjct 3817879 CTCTTTCTGAATGTTGTAGTCGGCAAGAGTTCGGCCATCCTCAAGTTGCTTGCCGGCGAA 3817938 Query 39153 TATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGT 39212 || | || ||||| || | ||| | | || || ||| |||||| |||| ||| Sbjct 3817939 GATCAATCGTTGCTGATCCGGGGGAATCCCTTCCTTATCCTGGATTTTGGCCTTGA-CGT 3817997 Query 39213 CGCC-ACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAA 39271 | | | || ||| |||||||| || | ||||| | || || || || || |||| Sbjct 3817998 TGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATGGTCTTGCCTGTAAGGGTCTTAA 3818057 Query 39272 CAAAGATTTGCATCTTTAC 39290 | ||||||||||||| ||| Sbjct 3818058 CGAAGATTTGCATCTATAC 3818076 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429380883222632