Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20melo_20[refseq_20GCF_5F000313045.1_202012-10-05] 31,464 sequences; 374,928,489 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq16 111 1e-19 seq78 109 4e-19 seq32 86.0 4e-12 >seq16 Length=5655878 Score = 111 bits (122), Expect = 1e-19 Identities = 145/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| |||||||| ||||| || || ||||||||||||||||| | | Sbjct 2199162 ATGCAGATCTTCGTGAAAACCCTAACGGGTAAGACCATCACTCTCGAAGTTGAGAGCTCC 2199221 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || | || ||| | || | ||| || ||||| ||||| | || || || || Sbjct 2199222 GATACCATCGACAATGTCAAGGC-AAAGATCCAGGACAAGGAAGGAATCCCCCCGGACCA 2199280 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||||| || || ||||| || || || || |||| || ||| ||| ||| ||||| Sbjct 2199281 GCAGCGTTTGATTTTCGCCGGAAAGCAGCTCGAGGACGGCCGAACTCTAGCCGACTACAA 2199340 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || || || || Sbjct 2199341 CATTCAGAAGGAATCGAC 2199358 >seq78 Length=1515738 Score = 109 bits (120), Expect = 4e-19 Identities = 145/199 (73%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||| |||||||| ||||| || ||||| ||||| || || | || ||||| | | Sbjct 1185336 AATGCAAATTTTCGTCAAAACACTTACGGGGAAAACTATTACATTAGAGGTTGAAAGCTC 1185277 Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 ||||| | || ||| | ||| | || | || ||||| || || || || || || | Sbjct 1185276 TGACACAATCGATAATGTCAAAGCTAAGA-TTCAAGACAAGGAGGGAGTTCCCCCGGACC 1185218 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 | ||| | || || ||||| ||||| || || ||||| | ||| || ||| |||||||| Sbjct 1185217 AGCAGAGGTTGATCTTTGCAGGCAAGCAGCTCGAAGATGGACGGACACTAGCCGATTACA 1185158 Query 23789 ACATACAAAAAGAGTCCAC 23807 |||| ||||| || ||||| Sbjct 1185157 ACATTCAAAAGGAATCCAC 1185139 Score = 95.1 bits (104), Expect = 8e-15 Identities = 149/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||| || ||||| ||||||||||| || ||||| ||||| | || || || | | Sbjct 1185564 AATGCAAATCTTCGTGAAAACCCTCACTGGTAAAACCATCACCTTAGAGGTGGAAAGCTC 1185505 Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 || || | || ||| | || | || || || ||||| ||| | || || || | Sbjct 1185504 TGATACCATCGATAATGTGAAGGC-TAAGATCCAAGATAAAGAGGGTATTCCCCCTGACC 1185446 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 ||||| | |||| || || || |||||||| ||||| | || ||||| | || |||| Sbjct 1185445 AACAGAGGCTAATTTTCGCTGGTAAACAACTTGAAGATGGCCGGACTTTGGCGGACTACA 1185386 Query 23789 ACATACAAAAAGAGTCCACATTACATTTAGT 23819 | || ||||| || ||||| || ||||| || Sbjct 1185385 ATATTCAAAAGGAATCCACTTTGCATTTGGT 1185355 Score = 86.0 bits (94), Expect = 4e-12 Identities = 140/199 (70%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||| || || || || ||| | || ||||| || ||||| | || ||||| | | Sbjct 1184881 AATGCAAATATTTGTGAAGACCTTGACAGGAAAGACAATCACATTGGAGGTTGAGAGCTC 1184822 Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 ||||| |||| || |||| | |||| | ||||| || ||| | || || || | Sbjct 1184821 AGACACCATTGATAACGTTAAGGCTAAAA-TCCAGGACAAGGAGGGTATCCCTCCTGACC 1184763 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 | || | | || || || || |||||| |||| || | ||| || || | |||||||| Sbjct 1184762 AGCAAAGACTCATTTTCGCTGGAAAACAATTGGAGGATGGACGTACATTGGCCGATTACA 1184703 Query 23789 ACATACAAAAAGAGTCCAC 23807 |||| ||||| |||||||| Sbjct 1184702 ACATTCAAAAGGAGTCCAC 1184684 Score = 82.4 bits (90), Expect = 5e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || || || ||||| ||||| |||||||| || || || || ||||| | Sbjct 1185791 ATGCAAATCTTTGTGAAAACTCTCACCGGAAAAACAATAACCCTTGAGGTTGAAAGTTCT 1185732 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 |||||| | || | |||| |||||| || || ||||| | || ||||| || Sbjct 1185731 GACACTATCGACAATGTAAAGGCCAAAATTCAAGATAAGGAAGGAATCCCTCCAGACCAG 1185672 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || | | || || || || || ||||| || || | || || | | ||||||||| Sbjct 1185671 CAAAGGCTTATTTTCGCTGGAAAGCAACTTGAGGATGGTCGAACCCTCGCTGATTACAAC 1185612 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 ||||||||||| || || | || || ||| | | || || || ||| Sbjct 1185611 ATACAAAAAGAATCAACCCTTCACTTGGTTCTCCGTTTACGTGGTGGA 1185564 >seq32 Length=4239389 Score = 86.0 bits (94), Expect = 4e-12 Identities = 140/199 (70%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||||||||| || || | || || || || ||||| | ||||| || | Sbjct 976831 AATGCAGATTTTCGTGAAGACGTTAACAGGGAAGACAATCACATTGGAAGTCGAAAGTTC 976772 Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 ||||| | || ||| | || | || | || |||||||| || | || ||||||| Sbjct 976771 AGACACCATCGACAATGTGAAGGCGAAGA-TTCAAGACAAAGAGGGGATTCCTCCAGATC 976713 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 ||||| | | || ||||| || || ||| |||| || | || || || | ||||||| Sbjct 976712 AACAGAGACTGATCTTTGCTGGAAAGCAATTGGAGGATGGTCGGACATTGGCTGATTACA 976653 Query 23789 ACATACAAAAAGAGTCCAC 23807 | || || ||||||||||| Sbjct 976652 ATATCCAGAAAGAGTCCAC 976634 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337879984303712