Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20melo_20[refseq_20GCF_5F000313045.1_202012-10-05] 31,464 sequences; 374,928,489 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq23 172 5e-38 >seq23 Length=5684809 Score = 172 bits (190), Expect = 5e-38 Identities = 568/871 (65%), Gaps = 19/871 (2%) Strand=Plus/Minus Query 4257 TTTTGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTT 4316 ||||||||||| |||| || || ||||||||||| || |||| |||||||| Sbjct 1473735 TTTTGGTATTCCCCAACTCTTTTCTCAAAGAAATTAGTCTTCCCTTGCAACGAAATCAAC 1473676 Query 4317 TCCATAAAATCAAACGGATTAGTTG--CGTTGTAATGTTTTTCACACTTTAGAGCTACAA 4374 ||||| ||||||| || || ||| | || || ||| || || | | | ||| Sbjct 1473675 TCCATCCAATCAAATGGGTT--TTGAACATTATAGATTTTCTCGTACCCCAATGTTCCAA 1473618 Query 4375 GCAATCGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTA 4434 ||| | || || |||||||| || || || ||||| | || | || ||||||| | Sbjct 1473617 CCAACCTATCCGCCACAAATTCAATGTATTGACTCATCAAATCTCCATTCATTCCAACAA 1473558 Query 4435 ATCTCACAGGTAGCGCGTATGTCAAA--AACTCTTGTTCTATAGTTACGGCTTCTGTGAT 4492 ||| || | || || |||| || || |||||| ||||| || || | Sbjct 1473557 GAGCCACCGGCAAAGC--ATCACAAACGAATTCCCTCTCTATATCCACGGCCTCCGTAAC 1473500 Query 4493 TATATCTTTTATTTTATCTTTAGATGGTTTATTTACTAAGTATCCAAACAATAAACACGC 4552 || | | | | ||| | | ||| || || || | |||| ||||| || Sbjct 1473499 AATCTGCCTCACTCGATCCTCACTCAATTTCTTCCTCAACAATGAATACAACAAACAAGC 1473440 Query 4553 AAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGG 4612 |||||||||||| | |||||| |||| ||||| |||||| || ||||| ||||| || Sbjct 1473439 AAAATCACAATGAAGACCTTCATCTCGTGAAATCAATTCGTTTGAGAACGTCAATCCAGG 1473380 Query 4613 CATTAAACCTCTCTTTTTAAGCC--AAAATATAGCGGCAAATGACCCAGAAAAGAATATG 4670 |||||| || | ||||| | || |||||| ||| | || | || || ||||| || Sbjct 1473379 CATTAACCCACGTTTTTTCAACCAGAAAATAGAGCAGAAACT--ACCTGAGAAGAAAATT 1473322 Query 4671 CCTTCTACGGCGGCAAACGCTACTAATCGGGAC-CCGAACGAGCTGGCTTTGTCTTTAAT 4729 || || ||| ||||| || | |||| | | | || || | | || | ||| Sbjct 1473321 CCCTCGACGCAAGCAAATGCCA-AAATCCGCTCAGCAAATGA---GTCCGTGCTATCAAT 1473266 Query 4730 CCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAA 4789 ||| || || ||||| | || || ||||| || || || | || | ||||| | ||| Sbjct 1473265 CCACTTCAACGCCCAATCGGCCTTCTTCTTCACACATGGGACAGTATCAATAGCATGAAA 1473206 Query 4790 TAATTTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTC 4849 | | | || ||| | || | |||||||| || | || || |||||||| || Sbjct 1473205 CAGCCGATTCTTCTCACTGGAATCCTTGATATAAGTTTCAAGGAGAAGACTATACATCTC 1473146 Query 4850 AGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTG 4909 |||||| || || || ||| ||| |||||||| || ||| ||| ||||| | ||||| Sbjct 1473145 AGAATGAATGTTCTCAATACAAATTTGAAATCCATAGAAGGCTCTGGCTTCAGCGACTTG 1473086 Query 4910 AACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAA 4969 ||||| || || | | | | | ||| || || ||||| ||| ||| || || Sbjct 1473085 GACTTCTTTCATGAACCGTCCGGCAAGGTTCTCCAAAACGATACCATCAGAGGCGGCGAA 1473026 Query 4970 AAACGCCAAAACATGAGATATAAAGTACTGTTCGTCAG-GCTTAAGTTTTTTCCAGTGGG 5028 || || | || | || || |||| | ||||| | ||||| | ||| ||| Sbjct 1473025 GAAGGCAAGGACGTAAGTGATGAAGTGTTTCTCGTCGGAAGTTAAG-GAATCCCAATGGC 1472967 Query 5029 GCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTTGT 5088 | | |||| | | ||| || ||||| | ||||| || || ||| ||||| |||| Sbjct 1472966 GGAGGTCTTGTGAGAGATCGACCTCTTCGGCGGTCCAGAAGGAGGCTAGGGCTTTCTTGT 1472907 Query 5089 ACATAGACCAAATATCAGGATACTGAATCGG 5119 |||| ||| || | |||||| ||||| || Sbjct 1472906 ACATCTCCCAGATTTGAGGATATTGAATTGG 1472876 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 426885840357512