Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20melo_20[refseq_20GCF_5F000313045.1_202012-10-05] 31,464 sequences; 374,928,489 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq23 230 3e-55 seq7 114 2e-20 >seq23 Length=5684809 Score = 230 bits (254), Expect = 3e-55 Identities = 574/868 (66%), Gaps = 4/868 (0%) Strand=Plus/Minus Query 47850 TTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTT 47909 ||||| ||||| || || | |||||| || |||||||| || |||| ||| || || Sbjct 1473735 TTTTGGTATTCCCCAACTCTTTTCTCAAAGAAATTAGTCTTCCCTTGCAACGAAATCAAC 1473676 Query 47910 TCCATAAAATCAAATGGATTAACTGCATTATAAAtttttttAAATCCTAATTCTGAAATC 47969 ||||| |||||||||| || ||||||| ||||| | | || ||| | || | Sbjct 1473675 TCCATCCAATCAAATGGGTTTTGAACATTATAGATTTTCTCGTACCCCAATGTTCCAACC 1473616 Query 47970 AGTCTATCTGCAACGAATTCTATATATCTTTTCATCATTTCACAATTCATTCCTATAAGT 48029 | ||||| || || ||||| || ||| |||||| || | ||||||||| | ||| Sbjct 1473615 AACCTATCCGCCACAAATTCAATGTATTGACTCATCAAATCTCCATTCATTCCAACAAGA 1473556 Query 48030 TTAACTGGTAGAGCCTCCGTAAGAAACTCTTGTTCGATAGTGACAGCATCCACTATTATC 48089 || || | ||| || || || || || ||| || || ||| | ||| Sbjct 1473555 GCCACCGGCAAAGCATCACAAACGAATTCCCTCTCTATATCCACGGCCTCCGTAACAATC 1473496 Query 48090 GATGTTACCGTTTCCTCACTTGGTGGATACAACAAATGTTTAAACATTAAACATGCAAAA 48149 | || |||||||| | | | ||| | | ||| ||||| |||||| Sbjct 1473495 TGCCTCACTCGATCCTCACTCAATTTCTTCCTCAACAATGAATACAACAAACAAGCAAAA 1473436 Query 48150 TCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATT 48209 |||||||||||||||||||||| ||| |||||||| || || || | || |||||| Sbjct 1473435 TCACAATGAAGACCTTCATCTCGTGAAATCAATTCGTTTGAGAACGTCAATCCAGGCATT 1473376 Query 48210 AGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCT 48269 | ||||||||||| | ||| || || | |||| || || ||||| || || || Sbjct 1473375 AACCCACGTTTTTTCAACCAGAAAATAGAGCAGAAACTACCTGAGAAGAAAATTCCCTCG 1473316 Query 48270 ACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTCGTTGTGT--ATCCACCGTT 48327 ||| |||||||| || || | ||| | || || | ||| | | |||||| Sbjct 1473315 ACGCAAGCAAATGCCAAAA-TC-CGCTCAGCAAATGAGTCCGTGCTATCAATCCACTTCA 1473258 Query 48328 GTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAAGt 48387 |||||||| ||||||||||| ||||| || | || || ||||||| ||| || | Sbjct 1473257 ACGCCCAATCGGCCTTCTTCTTCACACATGGGACAGTATCAATAGCATGAAACAGCCGAT 1473198 Query 48388 ttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGGAGTGAA 48447 | || ||| || ||| || | ||||| || | | |||||||||||| || || |||| Sbjct 1473197 TCTTCTCACTGGAATCCTTGATATAAGTTTCAAGGAGAAGACTATACATCTCAGAATGAA 1473138 Query 48448 TATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTACCTCCG 48507 | || ||||| || |||||||| || || ||| ||||| | || || || || Sbjct 1473137 TGTTCTCAATACAAATTTGAAATCCATAGAAGGCTCTGGCTTCAGCGACTTGGACTTCTT 1473078 Query 48508 TACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCAGCAAAAAATGCTA 48567 | || ||| | || | ||||| || || |||||| || || || || || | Sbjct 1473077 TCATGAACCGTCCGGCAAGGTTCTCCAAAACGATACCATCAGAGGCGGCGAAGAAGGCAA 1473018 Query 48568 ATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTTATTCCAGTCATTGATATCTT 48627 || | | || || | ||| |||| |||||| | || ||| | || |||| Sbjct 1473017 GGACGTAAGTGATGAAGTGTTTCTCGTCGGAAGTTAAGGAATCCCAATGGCGGAGGTCTT 1472958 Query 48628 TTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTTATACATATTCC 48687 ||| | ||| || ||||| || ||||| || || || ||||| || ||||| | || Sbjct 1472957 GTGAGAGATCGACCTCTTCGGCGGTCCAGAAGGAGGCTAGGGCTTTCTTGTACATCTCCC 1472898 Query 48688 ATATATCACTGTATTGGATTGGGAAAAT 48715 | || | | ||||| |||||||| || Sbjct 1472897 AGATTTGAGGATATTGAATTGGGAACAT 1472870 >seq7 Length=7328097 Score = 114 bits (126), Expect = 2e-20 Identities = 158/221 (71%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 78159 CCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCG 78218 ||||| ||||| | ||||| || || | ||| | || | || ||| || | |||||| Sbjct 6776014 CCTCCTTGATCAACATATCGAGCAGTATCATTGAATACCCGCAGCATAGGCAAAATACCA 6776073 Query 78219 TTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGAT 78278 ||||||||||||||||||||| ||||||||| || | || |||||||| ||||| Sbjct 6776074 TTAGATGTTCCATTTGTTCCACGAATATAACTACCCATGGCACGAATATTGTGGATGGAA 6776133 Query 78279 ATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATA 78338 | || || || || || ||| || | ||| || ||| || ||||| || || Sbjct 6776134 ACACCAATACCACCAGCGGACTTGCTAATGACAGCACACTCTTTTAAGGTATCATATATT 6776193 Query 78339 CCCTCTATACTGTCATCCATCATGTTAAGAAGAAAACAGCT 78379 || |||||||| || ||| ||||| | ||| |||||||| Sbjct 6776194 CCTTCTATACTATCCTCCTTCATGCATACAAGGAAACAGCT 6776234 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694395586760960