Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20melo_20[refseq_20GCF_5F000313045.1_202012-10-05] 31,464 sequences; 374,928,489 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq23 248 1e-60 seq7 114 2e-20 >seq23 Length=5684809 Score = 248 bits (274), Expect = 1e-60 Identities = 578/868 (67%), Gaps = 4/868 (0%) Strand=Plus/Minus Query 46339 TTTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTT 46398 ||||||||||| || || | |||||| || |||||||| || |||| ||| || || Sbjct 1473735 TTTTGGTATTCCCCAACTCTTTTCTCAAAGAAATTAGTCTTCCCTTGCAACGAAATCAAC 1473676 Query 46399 TCCATAAAATCAAACGGATTAGTAACATTATAAAtttttttAAATCCTAATTCTGAAATC 46458 ||||| ||||||| || || ||||||||| ||||| | | || ||| | || | Sbjct 1473675 TCCATCCAATCAAATGGGTTTTGAACATTATAGATTTTCTCGTACCCCAATGTTCCAACC 1473616 Query 46459 AGTCTATCTGCAACGAATTCTATATACGTTTTCATCATTTCACAATTCATTCCTATGAGT 46518 | ||||| || || ||||| || || |||||| || | ||||||||| | || Sbjct 1473615 AACCTATCCGCCACAAATTCAATGTATTGACTCATCAAATCTCCATTCATTCCAACAAGA 1473556 Query 46519 TTGACCGGTAGAGCCTCCGTAAGAAACTCTTGTTCAATAGTGACAGCATCCGATATTATC 46578 ||||| | ||| || || || || || ||| || || |||| | ||| Sbjct 1473555 GCCACCGGCAAAGCATCACAAACGAATTCCCTCTCTATATCCACGGCCTCCGTAACAATC 1473496 Query 46579 GATGTTACTGTTTCCTCACTTGGTGGATGCATCAAATGTTTAAACATTAAACATGCAAAA 46638 | ||| |||||||| | | | |||| | | ||| ||||| |||||| Sbjct 1473495 TGCCTCACTCGATCCTCACTCAATTTCTTCCTCAACAATGAATACAACAAACAAGCAAAA 1473436 Query 46639 TCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATT 46698 ||||||||||| |||||||||| ||| |||||||| || || || | ||||||||| Sbjct 1473435 TCACAATGAAGACCTTCATCTCGTGAAATCAATTCGTTTGAGAACGTCAATCCAGGCATT 1473376 Query 46699 AGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCT 46758 | ||||| ||||| | ||| || |||| |||| || || ||||| || || || Sbjct 1473375 AACCCACGTTTTTTCAACCAGAAAATAGAGCAGAAACTACCTGAGAAGAAAATTCCCTCG 1473316 Query 46759 ACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCATCAT--TATGAATCCACCTTT 46816 || || ||||| | || || | ||| | || || | | ||| ||||||| | Sbjct 1473315 ACGCAAGCAAATGCCAAAA-TC-CGCTCAGCAAATGAGTCCGTGCTATCAATCCACTTCA 1473258 Query 46817 GAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAAGt 46876 |||||||| ||||| ||||| ||||| || | || || ||||||| ||| || | Sbjct 1473257 ACGCCCAATCGGCCTTCTTCTTCACACATGGGACAGTATCAATAGCATGAAACAGCCGAT 1473198 Query 46877 ttttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTATACATTTCTGAATGAA 46936 | || ||| ||| || | ||| || || | | |||||||||||| || ||||||| Sbjct 1473197 TCTTCTCACTGGAATCCTTGATATAAGTTTCAAGGAGAAGACTATACATCTCAGAATGAA 1473138 Query 46937 TGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACCTCTG 46996 |||| |||||| || |||||||| || || ||| ||||||| | || || ||| Sbjct 1473137 TGTTCTCAATACAAATTTGAAATCCATAGAAGGCTCTGGCTTCAGCGACTTGGACTTCTT 1473078 Query 46997 TACAAAATCGTTCAGACAAATTCTCATTCACTATTCCATCACTAGCAGCAAAAAATGCCA 47056 | || ||| | | | ||||| || || |||||| || || || || || | Sbjct 1473077 TCATGAACCGTCCGGCAAGGTTCTCCAAAACGATACCATCAGAGGCGGCGAAGAAGGCAA 1473018 Query 47057 ATACATGTTTAATAAAATATTTTTCATCGGTAGTCAGTTTATTCCAGTCATTGATATCTT 47116 || | | || || | ||| || |||| ||| | || ||| | || |||| Sbjct 1473017 GGACGTAAGTGATGAAGTGTTTCTCGTCGGAAGTTAAGGAATCCCAATGGCGGAGGTCTT 1472958 Query 47117 TTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATACATATTCC 47176 ||| | ||| || ||||| || |||||||| || || ||||| || ||||| | || Sbjct 1472957 GTGAGAGATCGACCTCTTCGGCGGTCCAGAAGGAGGCTAGGGCTTTCTTGTACATCTCCC 1472898 Query 47177 ATATATCACGATATTGGATCGGAAAAAT 47204 | || | | ||||||| || || || || Sbjct 1472897 AGATTTGAGGATATTGAATTGGGAACAT 1472870 >seq7 Length=7328097 Score = 114 bits (126), Expect = 2e-20 Identities = 160/222 (72%), Gaps = 2/222 (1%) Strand=Plus/Plus Query 76754 CCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCG 76813 ||||| ||||| | ||||| ||||| | ||| | || | || ||| || | ||| || Sbjct 6776014 CCTCCTTGATCAACATATCGAGCAGTATCATTGAATACCCGCAGCATAGGCAAAATACCA 6776073 Query 76814 TTAGATGTACCATTTGTTCCAGAAATATAACTTCCACAT-GCACGAATATTACTAATAGA 76872 |||||||| |||||||||||| ||||||||| || ||| ||||||||||| || || Sbjct 6776074 TTAGATGTTCCATTTGTTCCACGAATATAACTACC-CATGGCACGAATATTGTGGATGGA 6776132 Query 76873 TAGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGAT 76932 | || || || || || || || | |||||| ||| || || ||||| || Sbjct 6776133 AACACCAATACCACCAGCGGACTTGCTAATGACAGCACACTCTTTTAAGGTATCATATAT 6776192 Query 76933 GCCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCT 76974 || ||||||||||| ||| ||||| | ||| |||||||| Sbjct 6776193 TCCTTCTATACTATCCTCCTTCATGCATACAAGGAAACAGCT 6776234 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712654002900480