Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20melo_20[refseq_20GCF_5F000313045.1_202012-10-05] 31,464 sequences; 374,928,489 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq78 149 1e-30 seq1 147 5e-30 seq16 145 2e-29 seq32 118 2e-21 seq7 113 1e-19 >seq78 Length=1515738 Score = 149 bits (164), Expect = 1e-30 Identities = 161/210 (77%), Gaps = 5/210 (2%) Strand=Plus/Plus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| ||||| || || |||||||| ||||||||||| || | |||| ||||| || | Sbjct 1185585 CAAG-TGAAGGGTTGATTCTTTTTGTATGTTGTAATCAGCGAGGGTTCGACCATCCTCAA 1185643 Query 151957 G--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTG 152014 | ||||| || ||||| |||||||| |||||||| | | |||||||||||| ||||| Sbjct 1185644 GTTGCTTT--CCAGCGAAAATAAGCCTTTGCTGGTCTGGAGGGATTCCTTCCTTATCTTG 1185701 Query 152015 AATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTT 152074 |||||| || ||| | || | |||| ||||| || || ||||| || || ||||| Sbjct 1185702 AATTTTGGCCTTTACATTGTCGATAGTGTCAGAACTTTCAACCTCAAGGGTTATTGTTTT 1185761 Query 152075 GCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || |||||||| ||||| |||| ||||| Sbjct 1185762 TCCGGTGAGAGTTTTCACAAAGATTTGCAT 1185791 Score = 143 bits (158), Expect = 6e-29 Identities = 160/214 (75%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 ||| ||||| |||||||| || || ||||| |||||||||||||||| || | ||||| Sbjct 1185123 GAGCACAAGGTGAAGAGTGGATTCCTTTTGAATGTTGTAATCGGCTAGTGTCCGTCCATC 1185182 Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011 ||| || || || || ||||| | |||||||||||||| | | ||| ||||| || Sbjct 1185183 TTCGAGCTGCTTGCCTGCAAAGATCAACCTCTGCTGGTCCGGGGGAACTCCCTCCTTGTC 1185242 Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGT 152071 |||||| || ||||||| | || | |||| || || || || || | |||||||| Sbjct 1185243 TTGAATCTTAGCTTTGACATTATCGATTGTGTCAGAGCTTTCAACCTCTAATGTAATAGT 1185302 Query 152072 TTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 ||| ||||| || || || ||||| | |||||| Sbjct 1185303 TTTCCCCGTAAGTGTTTTGACGAAAATTTGCATT 1185336 Score = 113 bits (124), Expect = 1e-19 Identities = 152/209 (73%), Gaps = 2/209 (1%) Strand=Plus/Plus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| || ||||| || || ||||| ||||| || ||||||| ||| || |||||||| | Sbjct 1184902 CAAG-TGGAGAGTTGATTCCTTTTGAATGTTATAGTCGGCTAGAGTCCTACCATCTTCCA 1184960 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 || || ||||| || | ||||| ||||| | | ||| ||||| || ||||||| Sbjct 1184961 ATTGCTTACCAGCGAAAATCAATCTCTGTTGGTCTGGTGGGATCCCTTCTTTATCTTGAA 1185020 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 | || || ||| | || | | ||||||||||| ||||| | ||| || ||||| | Sbjct 1185021 TCTTAGCCTTAACATTATCAATTGTATCTGAACTCTCAACTTCCAAAGTGATTGTTTT-C 1185079 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCATT 152105 |||| | ||| ||||| || | |||||| Sbjct 1185080 CCGTTAAAGTTTTCACAAAAATTTGCATT 1185108 Score = 109 bits (120), Expect = 1e-18 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 |||||||| || || || ||||| ||||| |||||||||||||| || || | ||||| Sbjct 1184669 AGGACAAGGTGGAGGGTGGACTCCTTTTGAATGTTGTAATCGGCCAATGTACGTCCATCC 1184728 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || | ||| || ||||| || || || |||||||| | | ||| || ||||| || Sbjct 1184729 TCCAATTGTTTTCCAGCGAAAATGAGTCTTTGCTGGTCAGGAGGGATACCCTCCTTGTCC 1184788 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 || ||||| || || | || | | ||||||| ||||| || || | || || || Sbjct 1184789 TGGATTTTAGCCTTAACGTTATCAATGGTGTCTGAGCTCTCAACCTCCAATGTGATTGTC 1184848 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 || || || | |||||||| || | |||||| Sbjct 1184849 TTTCCTGTCAAGGTCTTCACAAATATTTGCATT 1184881 >seq1 Length=8341428 Score = 147 bits (162), Expect = 5e-30 Identities = 168/224 (75%), Gaps = 4/224 (2%) Strand=Plus/Plus Query 151883 CCTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGT 151942 ||| || | ||| ||||| ||||| || ||||| ||||| |||||||| || || | ||| Sbjct 3816722 CCTCAGACGGAGAACAAGGTGAAGGGTGGACTCCTTTTGAATGTTGTAGTCAGCAAGAGT 3816781 Query 151943 TCTCCCATCTTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATT 152000 || ||||| || || ||||| ||||||||||| | |||||||||||| | | || Sbjct 3816782 CCTTCCATCCTCCAGCTGCTTT--CCGGCGAAGATCAACCTCTGCTGGTCTGGGGGAATG 3816839 Query 152001 CCTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCA 152060 |||||||| |||||||||||| || || | || | | | || || ||||| || || Sbjct 3816840 CCTTCCTTATCTTGAATTTTTGCCTTAACGTTGTCAATGGTATCGGAGCTCTCGACCTCG 3816899 Query 152061 AGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || ||||| || || || || | |||||| ||||| | |||||| Sbjct 3816900 AGGGTAATTGTCTTCCCAGTCAAAGTCTTGACGAATATCTGCAT 3816943 Score = 141 bits (156), Expect = 2e-28 Identities = 159/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 |||||||| ||||| || ||||| || || ||||| ||||| || | || || |||||| Sbjct 3816504 AGGACAAGGTGAAGGGTCGACTCCTTCTGAATGTTATAATCAGCAAGGGTCCTTCCATCT 3816563 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || ||||||||| ||||| | |||||||||||| | | ||||| ||||| || Sbjct 3816564 TCAAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGTGGAATTCCCTCCTTGTCC 3816623 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 ||||||||| ||| || | || | | || |||||||| || || | ||| || || Sbjct 3816624 TGAATTTTTGCTTTCACGTTGTCGATTGTATCAGAACTCTCCACCTCCAAAGTGATGGTC 3816683 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 || || || | ||||| ||||||| ||||||| Sbjct 3816684 TTTCCAGTCAAGGTCTTAACGAAGATCTGCATT 3816716 Score = 136 bits (150), Expect = 9e-27 Identities = 164/221 (74%), Gaps = 4/221 (2%) Strand=Plus/Plus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||||| ||||||||||||||||||||| || || |||||||||||||| || | ||||| Sbjct 3817396 GAGTCGGAGGACAAGATGAAGAGTAGATTCCTTCTGGATGTTGTAATCAGCAAGAGTTCG 3817455 Query 151946 CCCATCTTCTA--GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 ||||| || | ||||| |||||||||||||| || |||||||| | | || ||| Sbjct 3817456 TCCATCCTCCAACTGCTTT--CCGGCGAAGATAAGTCTTTGCTGGTCTGGGGGAATACCT 3817513 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGA 152063 ||||| || || || || ||||| | || | | | || || ||| || || || Sbjct 3817514 TCCTTATCCTGGATCTTGGCCTTGACGTTATCAATGGTATCGGAGGACTCCACCTCGAGG 3817573 Query 152064 GTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || ||||| || || || |||||||| || || | ||||| Sbjct 3817574 GTGATAGTCTTTCCGGTAAGAGTCTTGACAAAAATTTGCAT 3817614 Score = 136 bits (150), Expect = 9e-27 Identities = 161/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 151887 AGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTC 151946 || || |||||||| |||||||| |||||||| || |||||||| ||||| | ||||| Sbjct 3817853 AGCCTTAGGACAAGGTGAAGAGTTGACTCTTTCTGAATGTTGTAGTCGGCAAGAGTTCGG 3817912 Query 151947 CCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCC 152006 ||||| || || || ||||||||||| | | ||||| |||| | || |||||| Sbjct 3817913 CCATCCTCAAGTTGCTTGCCGGCGAAGATCAATCGTTGCTGATCCGGGGGAATCCCTTCC 3817972 Query 152007 TTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTA 152066 || || || ||||| ||||| | || | | |||| ||| ||| || ||||| || Sbjct 3817973 TTATCCTGGATTTTGGCCTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTG 3818032 Query 152067 ATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || ||||| || || ||||| ||||||| ||||| Sbjct 3818033 ATGGTCTTGCCTGTAAGGGTCTTAACGAAGATTTGCAT 3818070 Score = 114 bits (126), Expect = 3e-20 Identities = 143/195 (73%), Gaps = 1/195 (1%) Strand=Plus/Plus Query 151896 ACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCT 151955 |||||||| || || ||||| || |||||||||||||| || | ||||| |||||||| Sbjct 3816963 ACAAGATGGAGGGTCGACTCCTTCTGGATGTTGTAATCTGCAAGAGTTCGGCCATCTTCC 3817022 Query 151956 AGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAG-ATTCCTTCCTTTTCTTG 152014 | |||||| ||||||||||| ||||||||||| | | | || |||||||| || || Sbjct 3817023 AACTGTTTCCCAGCGAAGATAAGTCTCTGCTGGTCTGGGGGGAATGCCTTCCTTGTCCTG 3817082 Query 152015 AATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTT 152074 ||| || || || | || | |||| ||| ||| || || | || || || || Sbjct 3817083 AATCTTAGCCTTCACGTTGTCAATTGTGTCAGAAGACTCAACCTCCAAGGTGATGGTCTT 3817142 Query 152075 GCCCGTGAGAGTCTT 152089 || |||||||| || Sbjct 3817143 CCCGGTGAGAGTTTT 3817157 Score = 109 bits (120), Expect = 1e-18 Identities = 158/221 (71%), Gaps = 4/221 (2%) Strand=Plus/Plus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||| | ||| || || || |||||||| || || || || ||||||||||| | |||| Sbjct 3817624 GAGCCGGAGCACGAGGTGGAGAGTAGATTCCTTCTGTATATTGTAATCGGCAAGGGTTCG 3817683 Query 151946 CCCATCTTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 || || || || ||||| || |||||||| || | |||||||||| | |||||| Sbjct 3817684 GCCGTCCTCAAGTTGCTTT--CCAGCGAAGATGAGACGTTGCTGGTCCGGGGGAATTCCT 3817741 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGA 152063 ||||| || ||||| || ||| || | || | |||| ||| ||| || ||||| Sbjct 3817742 TCCTTATCCTGAATCTTGGCTTTAACGTTGTCAATAGTGTCGGAAGACTCCACCTCAAGG 3817801 Query 152064 GTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || || || || || || || || |||| |||||| Sbjct 3817802 GTGATCGTCTTTCCGGTAAGTGTTTTTACAAAGATCTGCAT 3817842 >seq16 Length=5655878 Score = 145 bits (160), Expect = 2e-29 Identities = 167/223 (75%), Gaps = 4/223 (2%) Strand=Plus/Minus Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943 ||||| | || ||||| || || || || || || || |||||||| ||||||| |||| Sbjct 2199382 CTGAGACGAAGCACAAGGTGGAGGGTCGATTCCTTCTGAATGTTGTAGTCGGCTAGAGTT 2199323 Query 151944 CTCCCATCTTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTC 152001 | || || || || ||||| |||||||| || | | ||||||||||| | ||||| Sbjct 2199322 CGGCCGTCCTCGAGCTGCTTT--CCGGCGAAAATCAAACGCTGCTGGTCCGGGGGGATTC 2199265 Query 152002 CTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAA 152061 ||||||| || || || ||| |||||| | || | | | || || ||||| ||||| | Sbjct 2199264 CTTCCTTGTCCTGGATCTTTGCCTTGACATTGTCGATGGTATCGGAGCTCTCAACTTCGA 2199205 Query 152062 GAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 |||| || || || ||||| || || |||||||||| |||||| Sbjct 2199204 GAGTGATGGTCTTACCCGTTAGGGTTTTCACGAAGATCTGCAT 2199162 >seq32 Length=4239389 Score = 118 bits (130), Expect = 2e-21 Identities = 157/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 151887 AGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTC 151946 ||||| || || | ||| || ||||| || |||||||| ||||||||||| | |||| Sbjct 977297 AGTCTAAGCACCAAATGGAGTGTAGATTCCTTTTGGATATTGTAATCGGCAAGCGTTCGG 977356 Query 151947 CCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCC 152006 || || || || || || || |||||||||||||| ||||| | | || || || Sbjct 977357 CCGTCCTCAAGTTGCTTACCAGCAAAGATAAGCCTCTGTTGGTCGGGTGGAATGCCCTCT 977416 Query 152007 TTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTA 152066 || |||||||| ||| || ||| | || | | || || || || || || || || Sbjct 977417 TTATCTTGAATCTTTGCCTTAACATTGTCAATTGTATCAGAGCTTTCCACCTCGAGGGTG 977476 Query 152067 ATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || |||||||| |||||||| || ||||| | ||||| Sbjct 977477 ATTGTTTTGCCAGTGAGAGTTTTTACGAATATTTGCAT 977514 Score = 114 bits (126), Expect = 3e-20 Identities = 156/216 (72%), Gaps = 4/216 (2%) Strand=Plus/Plus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 ||||||||| || || || |||||||| ||||| |||||||| || || || | ||||| Sbjct 976618 GAGGACAAGGTGGAGGGTGGACTCTTTCTGGATATTGTAATCAGCCAATGTCCGACCATC 976677 Query 151952 TTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTT 152009 || | ||||| || || ||||| || ||||| || || | | || || || || Sbjct 976678 CTCCAATTGCTTT--CCAGCAAAGATCAGTCTCTGTTGATCTGGAGGAATCCCCTCTTTG 976735 Query 152010 TCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATA 152069 |||||||| || || ||| | || | | |||||||||| || ||||| | || || Sbjct 976736 TCTTGAATCTTCGCCTTCACATTGTCGATGGTGTCTGAACTTTCGACTTCCAATGTGATT 976795 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 || || || || | ||||||||||| | ||||||| Sbjct 976796 GTCTTCCCTGTTAACGTCTTCACGAAAATCTGCATT 976831 >seq7 Length=7328097 Score = 113 bits (124), Expect = 1e-19 Identities = 101/127 (80%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 |||||||| ||||| || ||||| || || ||||||||||| || | ||| |||||||| Sbjct 2412260 AGGACAAGGTGAAGGGTGGACTCCTTCTGAATGTTGTAATCAGCGAGAGTCCTCCCATCC 2412201 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 ||||| ||||| || ||||| | ||||||||| |||| | ||| |||||||| || Sbjct 2412200 TCTAGCTGCTTCCCAGCAAAGATCAACCTCTGCTGATCCGGAGGGATGCCTTCCTTGTCC 2412141 Query 152013 TGAATTT 152019 ||||||| Sbjct 2412140 TGAATTT 2412134 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153355657336344