Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20melo_20[refseq_20GCF_5F000313045.1_202012-10-05] 31,464 sequences; 374,928,489 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq18709 315 7e-81 seq23 167 2e-36 >seq18709 Length=383 Score = 315 bits (348), Expect = 7e-81 Identities = 229/262 (87%), Gaps = 4/262 (2%) Strand=Plus/Minus Query 8357 CCCAGGCTGGAGTGCAGTGGCCTGATCTCCGCTCACTGCAACCTCCGCCTCCCGGGTTCA 8416 |||||||||||||||| |||| ||||| | ||||||||||| | |||| || |||||| Sbjct 360 CCCAGGCTGGAGTGCAATGGCGCAATCTCAGGTCACTGCAACCCCTGCCTTCCAGGTTCA 301 Query 8417 AGCTATTCTCCTGCCTCAGCCTCCAGAGTAGCTGGGATT--ACAGGCAAAAGCCACCACG 8474 ||| ||||||||| |||||||||| |||||||||||||| ||||||| ||||| | Sbjct 300 AGCAATTCTCCTGTCTCAGCCTCCCGAGTAGCTGGGATTTTACAGGCATGTGCCACTGTG 241 Query 8475 CCAAGCTAATTTTTGTATTTTTAGTAGAGAGAGGGTTTCACCATGTTGGCCAGGCTGGTC 8534 || |||||||||| |||| || |||||||| ||||||||||||||||| |||||||||| Sbjct 240 CCCAGCTAATTTT-GTATGTT-AGTAGAGACGGGGTTTCACCATGTTGGTCAGGCTGGTC 183 Query 8535 TCGAACTCCTGACCTCATGTGATCCACCTGCCTCGGCCTCCCAAAGTGCTGGGATTACAG 8594 ||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||| Sbjct 182 TCGAACTCCTGACCTCAGGTGATCCACCCGCCTCGGCCTCCCAAAGTGCTGGGATTACAG 123 Query 8595 GCATGAGCCACCGCGCCTGGCC 8616 || |||||||||| || ||||| Sbjct 122 GCGTGAGCCACCGTGCATGGCC 101 >seq23 Length=5684809 Score = 167 bits (184), Expect = 2e-36 Identities = 500/760 (66%), Gaps = 25/760 (3%) Strand=Plus/Minus Query 23218 TTTTGATATTCCCCAACACGTCTTTCGAAAAAATTTGTCTTACCCTCTAATGATATATTT 23277 ||||| ||||||||||| | | | || || ||||| ||||| || | || || || Sbjct 1473735 TTTTGGTATTCCCCAACTCTTTTCTCAAAGAAATTAGTCTTCCCTTGCAACGAAATCAAC 1473676 Query 23278 TCCATAAAATCAAATGGATTAGAAGTATTATATACAGCTT--TACATGATAATTCCTTTA 23335 ||||| |||||||||| || | |||||| | | ||| | |||| Sbjct 1473675 TCCATCCAATCAAATGGGTTTTGAACATTATAGATTTTCTCGTACCCCAATGTTCCAACC 1473616 Query 23336 AAAGCCTATCTGCTACAAATTCAATATATTGACACATCAAATCATAGTTTATACCTATTA 23395 || |||||| || ||||||||||| ||||||| ||||||||| || || || | | Sbjct 1473615 AA--CCTATCCGCCACAAATTCAATGTATTGACTCATCAAATCTCCATTCATTCCAACAA 1473558 Query 23396 GTTTTACTGGAATCGCATCATATAAGAATAGTTTTTCAATGGAAACAGCATCTTTAATTA 23455 | || || | |||||| | | |||| | || || || || || ||| | Sbjct 1473557 GAGCCACCGGCAAAGCATCACAAACGAATTCCCTCTCTATATCCACGGCCTCCGTAACAA 1473498 Query 23456 TTTGAACAATAACT---TCTTCACTAGGTGGATATTTTAAATACTTAA-ACAATAAACAT 23511 | || | ||| || ||||| | | | | || | | || |||| ||||| Sbjct 1473497 TCTGCC---TCACTCGATCCTCACTCAATTTCT-TCCTCAACAATGAATACAACAAACAA 1473442 Query 23512 GCAAAATCACAATGTAGGCCTTCATCCCTACTAATCAATTCATTAGAAAATGTTAATCCT 23571 |||||||||||||| || |||||||| | ||||||||| || || || || ||||| Sbjct 1473441 GCAAAATCACAATGAAGACCTTCATCTCGTGAAATCAATTCGTTTGAGAACGTCAATCCA 1473382 Query 23572 GGCATTAATCCTCGTTTTTTAATCC--AAAATATTGCAGCAAATGATCCGGAAAAGAAAA 23629 |||||||| || |||||||| | || |||||| |||| || | || || ||||||| Sbjct 1473381 GGCATTAACCCACGTTTTTTCAACCAGAAAATAGAGCAGAAACT--ACCTGAGAAGAAAA 1473324 Query 23630 TACCCTCAACAGCCGCAAAGGCCACAAGACGTGTACCAAATGTTGCATTATAATCAGAAA 23689 | ||||| || ||||| |||| || || | |||||| | | ||| || Sbjct 1473323 TTCCCTCGACGCAAGCAAATGCCAAAATCCGCTCAGCAAATGAGTCCGTGCTATC---AA 1473267 Query 23690 TCCAtttttttGTCCAATTAGCCTTCAATTTTACACACTCAATTGTTTCAATTGCTTTTA 23749 |||| || | ||||| |||||| || ||||| | || ||||| || | | Sbjct 1473266 TCCACTTCAACGCCCAATCGGCCTTCTTCTTCACACATGGGACAGTATCAATAGCATGAA 1473207 Query 23750 AGAGAAAAGTTTTTTCTTCATT---ATCTGTTATATATGTATCAATTAGTAAACTATACA 23806 | || | || ||| ||| | ||| | ||||| || |||| || | |||||||| Sbjct 1473206 ACAG--CCGATTCTTC-TCACTGGAATCCTTGATATAAGTTTCAAGGAGAAGACTATACA 1473150 Query 23807 TTTCAGAATGAATATTTTCAATAGCAATCTGAAACCCATAAAAACATCTAGCTTCAGACA 23866 | ||||||||||| || |||||| ||| ||||| ||||| || ||| ||||||| | Sbjct 1473149 TCTCAGAATGAATGTTCTCAATACAAATTTGAAATCCATAGAAGGCTCTGGCTTCAGCGA 1473090 Query 23867 ATTGAACATCATTAAAAAATCTTTTAGCTAAATTTTCGTTAACAATACCATCACTAGCAG 23926 ||| || || || | || | | || | || || ||| ||||||||| || | Sbjct 1473089 CTTGGACTTCTTTCATGAACCGTCCGGCAAGGTTCTCCAAAACGATACCATCAGAGGCGG 1473030 Query 23927 CAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATC 23966 | ||||| ||||| || || | || || ||| | || || Sbjct 1473029 CGAAGAAGGCAAGGACGTAAGTGATGAAGTGTTTCTCGTC 1472990 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521282898769600