Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20melo_20[refseq_20GCF_5F000313045.1_202012-10-05] 31,464 sequences; 374,928,489 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq16 123 2e-23 seq1 123 2e-23 seq78 120 2e-22 seq7 98.7 7e-16 seq12137 95.1 9e-15 seq32 93.3 3e-14 >seq16 Length=5655878 Score = 123 bits (136), Expect = 2e-23 Identities = 170/232 (73%), Gaps = 8/232 (3%) Strand=Plus/Minus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGC- 44169 || ||||| || | | ||| ||||| || || ||||| || |||||||| ||||| Sbjct 2199388 CCTCCTCTGAGACGAAGCACAAGGTGGAGGGTCGATTCCTTCTGAATGTTGTAGTCGGCT 2199329 Query 44170 -GAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAG 44228 ||||| | || |||| || |||||||| ||||| || |||||||||||||| || | | Sbjct 2199328 AGAGTTCG-GC-CGTCCTCGAGCTGCTTTCCGGCGAAAATCAAACGCTGCTGGTCCGGGG 2199271 Query 44229 GCACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTC 44286 | | |||||||| ||| ||||| ||| || ||| | ||||| |||| | || Sbjct 2199270 GGATTCCTTCCTTGTCCTGGATCTTTGCCTTGACATTGT--CGATGGTATCGGAGCTCTC 2199213 Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 || || | || || ||||| ||||| ||||| ||||||||||| |||||| Sbjct 2199212 AACTTCGAGAGTGATGGTCTTACCCGTTAGGGTTTTCACGAAGATCTGCATG 2199161 >seq1 Length=8341428 Score = 123 bits (136), Expect = 2e-23 Identities = 156/211 (74%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGC--GAGTTGGCGCTCGTCGT 44186 || |||||||| || ||| || || |||||||| ||||| ||||| | || | || | Sbjct 3817862 ACAAGGTGAAGAGTTGACTCTTTCTGAATGTTGTAGTCGGCAAGAGTTCG-GC-CATCCT 3817919 Query 44187 CCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCG 44246 | || ||||| ||||| |||||||| || |||||||| | || | |||||||| ||| Sbjct 3817920 CAAGTTGCTTGCCGGCGAAGATCAATCGTTGCTGATCCGGGGGAATCCCTTCCTTATCCT 3817979 Query 44247 TTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306 || || ||| | | | |||||||||| || |||||||| | || || |||| Sbjct 3817980 GGATTTTGGCCTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATGGTCT 3818039 Query 44307 TTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | || || |||||||| |||||||||||||| Sbjct 3818040 TGCCTGTAAGGGTCTTAACGAAGATTTGCAT 3818070 Score = 118 bits (130), Expect = 8e-22 Identities = 167/232 (72%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 |||||| || ||||| | | || |||||||| ||| ||||||||| |||||||| || Sbjct 3816713 CATTCCTCCCCTCAGACGGAGAACAAGGTGAAGGGTGGACTCCTTTTGAATGTTGTAGTC 3816772 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 || || | | || ||||||||||| ||||| |||||||| | |||||| |||| Sbjct 3816773 AGCAAGAGTCCTTCCATCCTCCAGCTGCTTTCCGGCGAAGATCAACCTCTGCTGGTCTGG 3816832 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTT-CCTATGGTGTCGGCGGATT 44285 || | |||||||| | | | | || ||| | || ||| | ||||| |||| | | Sbjct 3816833 GGGAATGCCTTCCTTAT-CTTGAATTTTTGCCTTAACGTTGTCAATGGTATCGGAGCTCT 3816891 Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | ||||| | ||||| ||||| || || | ||||| ||||| || ||||| Sbjct 3816892 CGACCTCGAGGGTAATTGTCTTCCCAGTCAAAGTCTTGACGAATATCTGCAT 3816943 Score = 116 bits (128), Expect = 3e-21 Identities = 154/212 (73%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGC--GAGTTGGCGCTCGTCGT 44186 || || ||||| || ||||| |||||||||||||| || ||||| || | || | Sbjct 3817406 ACAAGATGAAGAGTAGATTCCTTCTGGATGTTGTAATCAGCAAGAGTT--CGTCCATCCT 3817463 Query 44187 CCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCG 44246 ||| |||||| ||||| ||||| | | ||||| |||| || | ||||||||| ||| Sbjct 3817464 CCAACTGCTTTCCGGCGAAGATAAGTCTTTGCTGGTCTGGGGGAATACCTTCCTTATCCT 3817523 Query 44247 TTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306 ||||| ||| | | | ||||| |||| ||| |||||||| | || || |||| Sbjct 3817524 GGATCTTGGCCTTGACGTTATCAATGGTATCGGAGGACTCCACCTCGAGGGTGATAGTCT 3817583 Query 44307 TTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 |||| || || ||||| || || ||||||||| Sbjct 3817584 TTCCGGTAAGAGTCTTGACAAAAATTTGCATG 3817615 Score = 109 bits (120), Expect = 4e-19 Identities = 154/212 (73%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCT--CGTCGT 44186 || |||||||| || |||||| || ||||| ||||| || || || || | || | Sbjct 3816507 ACAAGGTGAAGGGTCGACTCCTTCTGAATGTTATAATCAGCAAG--GGTCCTTCCATCTT 3816564 Query 44187 CCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCG 44246 | ||||| ||||||||||||||||| | |||||| |||| || | || ||||| ||| Sbjct 3816565 CAAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGTGGAATTCCCTCCTTGTCC- 3816623 Query 44247 TTATCTTCTGCTTCAATGTT-CCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTC 44305 | | || ||||| | ||| | || || || | |||||||||| || || ||| Sbjct 3816624 TGAATTTTTGCTTTCACGTTGTCGATTGTATCAGAACTCTCCACCTCCAAAGTGATGGTC 3816683 Query 44306 TTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||||| || | |||||| |||||||| ||||| Sbjct 3816684 TTTCCAGTCAAGGTCTTAACGAAGATCTGCAT 3816715 Score = 109 bits (120), Expect = 4e-19 Identities = 153/212 (72%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187 ||| ||||| || || ||||| || || ||||||||||| || || |||| || Sbjct 3817633 CACGAGGTGGAGAGTAGATTCCTTCTGTATATTGTAATCGGCAAGGGTTCGGCCGTCCTC 3817692 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 || ||||| || || ||||| | ||| ||||| || | || | |||||||| ||| Sbjct 3817693 AAGTTGCTTTCCAGCGAAGATGAGACGTTGCTGGTCCGGGGGAATTCCTTCCTTATCCTG 3817752 Query 44248 TATCTTCTGCTTCAATGTT-CCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306 ||||| |||| || ||| | || ||||||| || |||||||| | || ||||||| Sbjct 3817753 AATCTT-GGCTTTAACGTTGTCAATAGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCT 3817811 Query 44307 TTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 |||| || || || || || ||||| |||||| Sbjct 3817812 TTCCGGTAAGTGTTTTTACAAAGATCTGCATG 3817843 Score = 89.7 bits (98), Expect = 4e-13 Identities = 165/236 (70%), Gaps = 7/236 (3%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || | || | |||||| || || || || |||||| |||||||||||||| Sbjct 3816941 CATACCACCACGGAGACGCAACACAAGATGGAGGGTCGACTCCTTCTGGATGTTGTAATC 3817000 Query 44167 GGC--GAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCT 44224 || ||||| || | || |||| ||| ||||| || ||||| | | |||||| ||| Sbjct 3817001 TGCAAGAGTT--CGGCCATCTTCCAACTGTTTCCCAGCGAAGATAAGTCTCTGCTGGTCT 3817058 Query 44225 -GAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGA 44283 | || | |||||||| ||| ||||| ||||| | | || ||||| | || Sbjct 3817059 GGGGGGAATGCCTTCCTTGTCCTGAATCTTAGCCTTCACGTTGTCAATTGTGTCAGAAGA 3817118 Query 44284 TTCCACCTCCACCGTAATCGTCTTTCCCGTGAG-GGTCTTCAC-GAAGATTTGCAT 44337 || ||||||| || || ||||| || ||||| | | || || || |||||||| Sbjct 3817119 CTCAACCTCCAAGGTGATGGTCTTCCCGGTGAGAGTTTTTGACAAAAAATTTGCAT 3817174 >seq78 Length=1515738 Score = 120 bits (132), Expect = 2e-22 Identities = 169/235 (72%), Gaps = 2/235 (1%) Strand=Plus/Plus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || |||||| || | || | | ||| |||||||| ||| |||||||| |||||||| Sbjct 1185102 TTGCATTCCACCACGAAGACGGAGCACAAGGTGAAGAGTGGATTCCTTTTGAATGTTGTA 1185161 Query 44164 ATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 |||||| ||| || | || || |||||||| || ||||||||||| | |||||| || Sbjct 1185162 ATCGGCTAGTGTCCGTCCATCTTCGAGCTGCTTGCCTGCAAAGATCAACCTCTGCTGGTC 1185221 Query 44224 TGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTT-CCTATGGTGTCGGCGG 44282 | || || || ||||| || ||||| |||| | || | || ||||| | | Sbjct 1185222 CGGGGGAACTCCCTCCTTGTCTTGAATCTT-AGCTTTGACATTATCGATTGTGTCAGAGC 1185280 Query 44283 ATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||| ||||| | ||||| || || ||||| || || || ||||| |||||||| Sbjct 1185281 TTTCAACCTCTAATGTAATAGTTTTCCCCGTAAGTGTTTTGACGAAAATTTGCAT 1185335 Score = 96.9 bits (106), Expect = 2e-15 Identities = 149/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 || ||||| || ||| ||||||||| |||||||||||||| | | || | || ||| Sbjct 1184672 ACAAGGTGGAGGGTGGACTCCTTTTGAATGTTGTAATCGGCCAATGTACGTCCATCCTCC 1184731 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 | || || || || || || | | ||||| || | ||| | ||| ||||| ||| Sbjct 1184732 AATTGTTTTCCAGCGAAAATGAGTCTTTGCTGGTCAGGAGGGATACCCTCCTTGTCCTGG 1184791 Query 44249 ATCTTCTGCTTCAATGTT-CCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 || || || | || ||| | |||||||| | | || ||||||| || || ||||| Sbjct 1184792 AT-TTTAGCCTTAACGTTATCAATGGTGTCTGAGCTCTCAACCTCCAATGTGATTGTCTT 1184850 Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||| || | ||||||||| || |||||||| Sbjct 1184851 TCCTGTCAAGGTCTTCACAAATATTTGCAT 1184880 Score = 82.4 bits (90), Expect = 5e-11 Identities = 146/211 (69%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 |||| |||||| || || ||||| ||||||||||| ||||| || | || || Sbjct 1185583 ACCAAGTGAAGGGTTGATTCTTTTTGTATGTTGTAATCAGCGAGGGTTCGACCATCCTCA 1185642 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 || ||||| || || || || | | ||||| |||| ||| | |||||||| || Sbjct 1185643 AGTTGCTTTCCAGCGAAAATAAGCCTTTGCTGGTCTGGAGGGATTCCTTCCTTATCTTGA 1185702 Query 44249 ATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306 || || ||| || ||| | || ||||| | ||| ||||| | || || || | Sbjct 1185703 ATTTTGGCCTTTACATTGT--CGATAGTGTCAGAACTTTCAACCTCAAGGGTTATTGTTT 1185760 Query 44307 TTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 |||| ||||| || ||||| ||||||||||| Sbjct 1185761 TTCCGGTGAGAGTTTTCACAAAGATTTGCAT 1185791 >seq7 Length=7328097 Score = 98.7 bits (108), Expect = 7e-16 Identities = 92/117 (79%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 || |||||||| ||| |||||| || ||||||||||| ||||| | | | || || Sbjct 2412257 ACAAGGTGAAGGGTGGACTCCTTCTGAATGTTGTAATCAGCGAGAGTCCTCCCATCCTCT 2412198 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCC 44245 ||||||||||| ||||||||||| | ||||||||| | ||| | |||||||| ||| Sbjct 2412197 AGCTGCTTCCCAGCAAAGATCAACCTCTGCTGATCCGGAGGGATGCCTTCCTTGTCC 2412141 >seq12137 Length=235 Score = 95.1 bits (104), Expect = 9e-15 Identities = 116/157 (74%), Gaps = 1/157 (1%) Strand=Plus/Minus Query 44183 TCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTT 44242 || || |||||||| || || |||||||| | |||||| |||| || | || |||||| Sbjct 234 TCTTCAAGCTGCTTTCCAGCGAAGATCAACCTCTGCTGGTCTGGTGGGATTCCCTCCTTT 175 Query 44243 -TCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAAT 44301 ||| ||||| ||||| | | |||||||| | || || ||||| | || || Sbjct 174 GTCCTGGATCTTGGCCTTCACGTTGTCAATGGTGTCAGACGACTCAACCTCAAGGGTGAT 115 Query 44302 CGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 |||||||| || |||||||||||||| || |||||| Sbjct 114 GGTCTTTCCGGTCAGGGTCTTCACGAAAATCTGCATG 78 >seq32 Length=4239389 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 || ||||| || ||| ||| || ||||| |||||||| || | | || | || ||| Sbjct 976622 ACAAGGTGGAGGGTGGACTCTTTCTGGATATTGTAATCAGCCAATGTCCGACCATCCTCC 976681 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 | ||||| || |||||||||| | ||| ||||||| ||| | || || || || Sbjct 976682 AATTGCTTTCCAGCAAAGATCAGTCTCTGTTGATCTGGAGGAATCCCCTCTTTGTCTTGA 976741 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 |||||| ||||| | | |||||||| | ||| || |||| || || ||||| Sbjct 976742 ATCTTCGCCTTCACATTGTCGATGGTGTCTGAACTTTCGACTTCCAATGTGATTGTCTTC 976801 Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || | ||||||||||| || ||||| Sbjct 976802 CCTGTTAACGTCTTCACGAAAATCTGCAT 976830 Score = 86.0 bits (94), Expect = 5e-12 Identities = 164/238 (69%), Gaps = 3/238 (1%) Strand=Plus/Plus Query 44102 TATTT-CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTT 44160 ||||| ||| || || | ||||| | ||||| || || || ||||||||||| || Sbjct 977278 TATTTGCATCCCACCGCGAAGTCTAAGCACCAAATGGAGTGTAGATTCCTTTTGGATATT 977337 Query 44161 GTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTG 44220 ||||||||| || || |||| || || ||||| || |||||||| | | ||| || Sbjct 977338 GTAATCGGCAAGCGTTCGGCCGTCCTCAAGTTGCTTACCAGCAAAGATAAGCCTCTGTTG 977397 Query 44221 ATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTT-CCTATGGTGTCGG 44279 || | || | || || || || ||||| ||| | || || | || || || | Sbjct 977398 GTCGGGTGGAATGCCCTCTTTATCTTGAATCTT-TGCCTTAACATTGTCAATTGTATCAG 977456 Query 44280 CGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | ||||||||| | || || || || || ||||| || || ||||| |||||||| Sbjct 977457 AGCTTTCCACCTCGAGGGTGATTGTTTTGCCAGTGAGAGTTTTTACGAATATTTGCAT 977514 Score = 82.4 bits (90), Expect = 5e-11 Identities = 135/193 (70%), Gaps = 4/193 (2%) Strand=Plus/Plus Query 44147 TCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAG 44206 ||||| || || ||||| || ||||| ||| |||| || |||||||| || ||||| Sbjct 977096 TCCTTCTGAATATTGTAGTCAGCGAGAGTCCGCCCGTCCTCGAGCTGCTTACCAGCAAAA 977155 Query 44207 ATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATG 44264 || | | ||| || || | || | ||||||||| || ||| || ||| || || Sbjct 977156 ATAAGTCTCTGTTGGTCAGGTGGAATACCTTCCTTGTCTTGTATTTTAGCCTTGACATTG 977215 Query 44265 TTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCA 44324 | | ||||| || | |||||||| | || || || || || || |||||||||| Sbjct 977216 T--CAATGGTATCAGAACTCTCCACCTCAAGAGTGATGGTTTTGCCAGTAAGGGTCTTCA 977273 Query 44325 CGAAGATTTGCAT 44337 | || |||||||| Sbjct 977274 CAAATATTTGCAT 977286 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359852355381288