Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20melo_20[refseq_20GCF_5F000313045.1_202012-10-05] 31,464 sequences; 374,928,489 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq1 120 3e-22 seq16 116 3e-21 seq78 104 2e-17 seq32 93.3 4e-14 >seq1 Length=8341428 Score = 120 bits (132), Expect = 3e-22 Identities = 166/230 (72%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || || || | ||| || || || || |||||||| || || || |||| Sbjct 3817615 GCCACCACGGAGCCGGAGCACGAGGTGGAGAGTAGATTCCTTCTGTATATTGTAATCGGC 3817674 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 ||||| || |||| || || ||||| || ||||| || || || || ||||||| ||| Sbjct 3817675 AAGGGTTCGGCCGTCCTCAAGTTGCTTTCCAGCGAAGATGAGACGTTGCTGGTCCGGGGG 3817734 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACAC-AGTGTCGCTCGACTCCA 41813 || | ||||| ||| ||| | || |||| |||| | || ||||||| ||||||| Sbjct 3817735 AATTCCTTCCTTATCC-TGAATCTTGGCTTTAACGTTGTCAATAGTGTCGGAAGACTCCA 3817793 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 |||| | || ||||| || || || || || ||||| || ||||||||| Sbjct 3817794 CCTCAAGGGTGATCGTCTTTCCGGTAAGTGTTTTTACAAAGATCTGCATG 3817843 Score = 109 bits (120), Expect = 5e-19 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || ||||| | || || || || || |||||||||||||||||| || | Sbjct 3816488 GCCACCACGGAGACGAAGGACAAGGTGAAGGGTCGACTCCTTCTGAATGTTATAATCAGC 3816547 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 ||||| | | || || ||||| || ||||| || |||| | ||| ||||| | || Sbjct 3816548 AAGGGTCCTTCCATCTTCAAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGTGG 3816607 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 || | |||||||||| ||| ||||||||| ||| | | | || || ||||| Sbjct 3816608 AATTCCCTCCTTGTCC-TGAATTTTTGCTTTCACGTTGTCGATTGTATCAGAACTCTCCA 3816666 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||||| || || || || || |||| ||||| ||||| |||||||| Sbjct 3816667 CCTCCAAAGTGATGGTCTTTCCAGTCAAGGTCTTAACGAAGATCTGCAT 3816715 Score = 104 bits (114), Expect = 2e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || || | || || || || || || ||| ||||||||||| ||||||| Sbjct 3817843 GCCACCACGAAGCCTTAGGACAAGGTGAAGAGTTGACTCTTTCTGAATGTTGTAGTCGGC 3817902 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 || || || | || || || |||||||||||||| |||| || || || |||| ||| Sbjct 3817903 AAGAGTTCGGCCATCCTCAAGTTGCTTGCCGGCGAAGATCAATCGTTGCTGATCCGGGGG 3817962 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 || | ||||| ||| || |||| || | ||| | | | |||||| ||||||| Sbjct 3817963 AATCCCTTCCTTATCC-TGGATTTTGGCCTTGACGTTGTCGATGGTGTCGGAAGACTCCA 3818021 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||| | || || || || || || || ||||| ||||| || ||||| Sbjct 3818022 CCTCAAGGGTGATGGTCTTGCCTGTAAGGGTCTTAACGAAGATTTGCAT 3818070 >seq16 Length=5655878 Score = 116 bits (128), Expect = 3e-21 Identities = 166/232 (72%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 41634 CGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGG 41693 |||| || | ||||| | ||| || || || || |||||||||||||| ||||||| Sbjct 2199390 CGCCTCCTCTGAGACGAAGCACAAGGTGGAGGGTCGATTCCTTCTGAATGTTGTAGTCGG 2199331 Query 41694 AGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGG 41753 || || || |||| ||||||||||| |||||||| |||| ||||| ||||||| || Sbjct 2199330 CTAGAGTTCGGCCGTCCTCGAGCTGCTTTCCGGCGAAAATCAAACGCTGCTGGTCCGGGG 2199271 Query 41754 GAACGCTCTCCTTGTCCATGATTTTTTGCTT--CAACGACGACACAGTGTCGCTCGACTC 41811 | | | ||||||||| ||| ||| ||| || | || | || ||| ||| Sbjct 2199270 GGATTCCTTCCTTGTCCTGGATCTTTGCCTTGACATTGTCG--ATGGTATCGGAGCTCTC 2199213 Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 || || | || || || |||||||| || || || ||||| ||||||||| Sbjct 2199212 AACTTCGAGAGTGATGGTCTTACCCGTTAGGGTTTTCACGAAGATCTGCATG 2199161 >seq78 Length=1515738 Score = 104 bits (114), Expect = 2e-17 Identities = 164/231 (71%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | ||| || || || ||| ||||| |||||||| || |||| Sbjct 1185109 CCACCACGAAGACGGAGCACAAGGTGAAGAGTGGATTCCTTTTGAATGTTGTAATCGGCT 1185168 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || || | || |||||||||||||| || || |||| | ||| ||||||| |||| Sbjct 1185169 AGTGTCCGTCCATCTTCGAGCTGCTTGCCTGCAAAGATCAACCTCTGCTGGTCCGGGGGA 1185228 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTC---GCTCGACTC 41811 || | |||||||| | ||| | || |||| || | | ||||| ||| || Sbjct 1185229 ACTCCCTCCTTGT-CTTGAATCTTAGCTTTGACATTATCGATTGTGTCAGAGCT---TTC 1185284 Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||||| | || || ||||| ||||| || || || |||||||| ||||| Sbjct 1185285 AACCTCTAATGTAATAGTTTTCCCCGTAAGTGTTTTGACGAAAATTTGCAT 1185335 >seq32 Length=4239389 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | |||| |||||| || ||||||||||| || ||||| | | Sbjct 977060 CCCCCACGAAGACGAAGAACCAAATGCAGAGTAGATTCCTTCTGAATATTGTAGTCAGCG 977119 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || ||| |||| ||||||||||| || || || || || | ||||||||| | ||| Sbjct 977120 AGAGTCCGCCCGTCCTCGAGCTGCTTACCAGCAAAAATAAGTCTCTGTTGGTCAGGTGGA 977179 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | ||||||| | || |||| || | || | | | || || |||||| Sbjct 977180 ATACCTTCCTTGT-CTTGTATTTTAGCCTTGACATTGTCAATGGTATCAGAACTCTCCAC 977238 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||| | || || ||||| || || || ||||| || || || ||||| Sbjct 977239 CTCAAGAGTGATGGTTTTGCCAGTAAGGGTCTTCACAAATATTTGCAT 977286 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462122175836800