Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20sativus_20[refseq_20GCF_5F000004075.2_202014-10-27] 190 sequences; 195,669,205 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq3 114 1e-20 seq1 86.0 5e-12 >seq3 Length=39782674 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||||||| | ||||| | || |||||||| || ||| ||| |||| | | Sbjct 19995412 ATGCAAATATTCGTAAAAACTCTCACTGGCAAAACAATCACCCTCGAGGTGGAAAGCTCT 19995471 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | | || | ||| ||||||| |||||||| || | || || ||| Sbjct 19995472 GATACAATTGACAATGTAAAGGCAAAAATTCAAGATAAAGAGGGCATTCCACCCGACCAA 19995531 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 || || ||||||||||| || || ||||| || || | ||| | |||||||||||| Sbjct 19995532 CAGAGGCTTATCTTTGCTGGTAAGCAACTTGAGGACGGCCGAACGCTTGCCGATTACAAT 19995591 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGGG 29189 || |||||||||||||| || || ||||| | || | || || ||| Sbjct 19995592 ATCCAGAAGGAATCTACACTCCATTTGGTGCTTAGACTTCGCGGTGGG 19995639 Score = 98.7 bits (108), Expect = 9e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||||||||||| | || || | || ||||||||||||||| || |||| | Sbjct 19995640 ATGCAAATATTTGTGAAGACCCTTACTGGCAAAACCATTACCCTTGAGGTGGAAAGTTCT 19995699 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | | || | ||| |||||| || || |||||| | || || ||| Sbjct 19995700 GATACCATTGACAATGTCAAGGCTAAAATTCAAGACAAGGAAGGTATACCACCTGACCAA 19995759 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 || |||||||| ||||| || || || || || ||| |||| | || || |||||| Sbjct 19995760 CAGAGACTTATTTTTGCTGGTAAGCAGCTCGAGGATGGTCGAACTCTCGCTGACTACAAT 19995819 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGT 29170 |||||||||||||||||||| || |||| Sbjct 19995820 ATTCAGAAGGAATCTACTCTGCATTTGGT 19995848 >seq1 Length=29149675 Score = 86.0 bits (94), Expect = 5e-12 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114 ||||| |||||| | ||| ||| || |||||||| ||||| || || || || ||||| Sbjct 6811343 GATAAGGAAGGTATTCCCCCAGACCAGCAAAGACTGATCTTCGCCGGAAAGCAGTTGGAA 6811284 Query 29115 GATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCA 29164 ||| ||| | ||||||||||| || ||||||||||| |||||||| Sbjct 6811283 GATGGACGAACACTTGCCGATTACAACATCCAGAAGGAATCCACTCTTCA 6811234 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428335008134450