Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20sativus_20[refseq_20GCF_5F000004075.2_202014-10-27] 190 sequences; 195,669,205 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq6 143 3e-29 seq5 122 9e-23 seq2 122 9e-23 seq3 118 1e-21 seq1 111 2e-19 >seq6 Length=29076228 Score = 143 bits (158), Expect = 3e-29 Identities = 163/216 (75%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || || ||||| |||||||||||| |||| |||||| || | Sbjct 26767792 ATGCAAATTTTCGTTAAGACCCTGACGGGTAAAACCATCACCCTCGAGGTCGAATCCTCT 26767733 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | | | |||| | |||| ||| || | ||||| ||||| || ||| | ||||| Sbjct 26767732 GATACCATCGATAACG-TGAAGGCAAAGATCCAGGACAAGGAGGGAATTCCCCCAGACCA 26767674 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| ||||||||| || || || || || || |||| || ||||| || || || Sbjct 26767673 ACAAAGACTCATCTTTGCCGGTAAGCAACTAGAGGACGGCCGTACCCTTGCTGATTATAA 26767614 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 ||||||||||||| |||| || || || |||||||| Sbjct 26767613 CATCCAGAAGGAGTCCACCCTCCACCTTGTGTTGCG 26767578 Score = 116 bits (128), Expect = 4e-21 Identities = 157/216 (73%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || ||| | || || || ||||||||| | || || || | | Sbjct 26767564 ATGCAGATTTTTGTCAAGACGTTGACCGGAAAGACCATCACCCTAGAGGTTGAGAGCTCT 26767505 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| |||||| || || | ||||| ||||| || ||| | ||||| Sbjct 26767504 GACACCATTGACAACG-TCAAGGCTAAGATCCAGGACAAGGAGGGAATTCCCCCAGACCA 26767446 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| |||| |||| || || || || || || |||| || ||||| ||| ||||| Sbjct 26767445 ACAAAGACTTATCTTTGCCGGTAAGCAACTAGAGGACGGTCGTACCCTTGCCGATTACAA 26767386 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 ||||||||||||| |||| || || || |||||||| Sbjct 26767385 CATCCAGAAGGAGTCCACCCTCCACCTTGTGTTGCG 26767350 Score = 114 bits (126), Expect = 1e-20 Identities = 153/210 (73%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| ||||| || || || || || |||||| | || || || | | Sbjct 26768248 ATGCAAATCTTCGTTAAAACCCTAACCGGTAAGACAATCACCCTTGAGGTTGAGTCGTCT 26768189 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | | |||| |||||| || || | ||||| || || || ||| |||| || Sbjct 26768188 GATACGATCGACAACG-TCAAGGCCAAGATCCAGGACAAGGAAGGAATTCCCCCGGATCA 26768130 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 |||||| ||||||| ||| || ||||| || || || | || ||| | ||||||||| Sbjct 26768129 GCAACGTCTCATCTTCGCTGGAAAACAACTCGAGGATGGCCGTACCTTGGCCGACTACAA 26768070 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||||||||||||| |||| || || || || Sbjct 26768069 CATCCAGAAGGAGTCCACCCTCCACCTTGT 26768040 Score = 105 bits (116), Expect = 7e-18 Identities = 151/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| ||||| || |||||||| ||||||||| | || || || | | Sbjct 26768020 ATGCAGATTTTCGTGAAAACCCTGACGGGCAAGACCATCACCCTTGAGGTTGAGTCGTCT 26767961 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| | |||| || || | |||||||||||||| || | ||||| Sbjct 26767960 GACACCATCGACAACG-TAAAGGCCAAGATCCAGGACAAAGAGGGCATTCCTCCAGACCA 26767902 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 || || || |||| ||| || || || || || || | || || | |||||| || Sbjct 26767901 ACAGCGTCTTATCTTCGCTGGAAAGCAACTCGAGGATGGCCGTACTTTGGCCGACTATAA 26767842 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||||||||||||| | || || || || || Sbjct 26767841 CATCCAGAAGGAGTCTACCCTCCACCTGGT 26767812 >seq5 Length=28023477 Score = 122 bits (134), Expect = 9e-23 Identities = 153/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| ||||| || ||||| || |||||||| |||| ||||| | || Sbjct 21959967 ATGCAGATCTTCGTGAAAACCCTAACGGGTAAGACCATCACTCTCGAAGTCGAGAGCTCC 21960026 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | | | | |||||| ||| || | ||||| || || ||||| |||||||| Sbjct 21960027 GATACCATCGACAATGTCAAGGCAAAGATCCAGGACAAGGAAGGAATCCCTCCGGACCAG 21960086 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || | || | ||| || || ||||| || |||| || || || |||||||||| Sbjct 21960087 CAGCGTTTGATTTTCGCCGGAAAGCAGCTTGAGGACGGCCGAACACTAGCCGACTACAAC 21960146 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTG 40899 || |||||||| ||||||| || || ||| Sbjct 21960147 ATTCAGAAGGAATCCACGCTCCACCTTGTG 21960176 >seq2 Length=23174626 Score = 122 bits (134), Expect = 9e-23 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| |||||||| || || || ||||| || |||| ||||| | Sbjct 15735434 ATGCAGATCTTCGTGAAAACGCTTACCGGGAAGACCATAACTCTCGAGGTCGAGAGTTCT 15735375 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | | | | |||||| ||| |||| ||||| || || || || | |||||| Sbjct 15735374 GATACCATCGATAATGTCAAGGCAAAGATTCAGGACAAGGAAGGAATACCGCCTGACCAG 15735315 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || ||||||| ||| || || |||||||| || | || || || |||||||||| Sbjct 15735314 CAGCGTCTCATCTTCGCCGGTAAGCAGCTGGAGGATGGTCGAACACTTGCCGACTACAAC 15735255 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTT 40901 ||||||||||| | ||||| ||||| || || Sbjct 15735254 ATCCAGAAGGAATCTACGCTCCATCTTGTCTT 15735223 >seq3 Length=39782674 Score = 118 bits (130), Expect = 1e-21 Identities = 152/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||||||||||||||| ||||| |||||||| |||||| |||| || ||| | | Sbjct 19995412 ATGCAAATATTCGTAAAAACTCTCACTGGCAAAACAATCACCCTCGAGGTGGAAAGCTCT 19995471 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | | | | |||| |||||||| || ||||||||||| || | ||||| Sbjct 19995472 GATACAATTGACAATGTAAAGGCAAAAATTCAAGATAAAGAGGGCATTCCACCCGACCAA 19995531 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || | || |||| || || || || || || |||| || || || ||| ||||| Sbjct 19995532 CAGAGGCTTATCTTTGCTGGTAAGCAACTTGAGGACGGCCGAACGCTTGCCGATTACAAT 19995591 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTG 40899 ||||||||||| | || || ||| | ||| Sbjct 19995592 ATCCAGAAGGAATCTACACTCCATTTGGTG 19995621 Score = 95.1 bits (104), Expect = 1e-14 Identities = 149/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 |||||||||||| || || || | || || || |||||||| | || || || | | Sbjct 4360803 AATGCAAATATTTGTGAAGACCTTGACAGGAAAGACCATCACATTGGAGGTTGAGAGCTC 4360744 Query 40749 CGACAGC-GTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807 |||| | || |||| | |||| ||||| | ||||| ||||| ||||| | |||| Sbjct 4360743 AGACACCATTGATAACG-TTAAGGCTAAAATCCAGGACAAGGAGGGTATCCCTCCTGACC 4360685 Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867 ||||| |||| || | ||| || || || |||| || | || || || ||| |||| Sbjct 4360684 AGCAAAGACTAATTTTCGCTGGAAAGCAATTGGAGGATGGACGTACACTGGCCGATTACA 4360625 Query 40868 ACATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 |||| || |||||| |||| || || || || Sbjct 4360624 ACATTCAAAAGGAGTCCACCCTCCACCTTGT 4360594 Score = 89.7 bits (98), Expect = 5e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||||||||| || || || || || ||||||||||| ||| | || || ||| | Sbjct 19995640 ATGCAAATATTTGTGAAGACCCTTACTGGCAAAACCATTACCCTTGAGGTGGAAAGTTCT 19995699 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | | | | |||||| ||||||| ||||| || || || || | ||||| Sbjct 19995700 GATACCATTGACAATGTCAAGGCTAAAATTCAAGACAAGGAAGGTATACCACCTGACCAA 19995759 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || |||| || | || || || ||||| || || | || || ||| |||||||| Sbjct 19995760 CAGAGACTTATTTTTGCTGGTAAGCAGCTCGAGGATGGTCGAACTCTCGCTGACTACAAT 19995819 Query 40870 ATCCAGAAGGAGGCCACGCTGCAT 40893 || |||||||| | || |||||| Sbjct 19995820 ATTCAGAAGGAATCTACTCTGCAT 19995843 >seq1 Length=29149675 Score = 111 bits (122), Expect = 2e-19 Identities = 152/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| || || || || || || || || || |||||| |||| || || || || Sbjct 6811436 ATGCAAATCTTTGTCAAGACTCTTACCGGAAAGACTATCACCCTCGAGGTGGAGTCCTCC 6811377 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | | | |||| |||||| || || | || || || || || ||| | ||||| Sbjct 6811376 GATACCATTGATAACG-TCAAGGCCAAGATCCAGGATAAGGAAGGTATTCCCCCAGACCA 6811318 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 |||| |||| |||| ||| || || ||| |||| || | || || || ||| ||||| Sbjct 6811317 GCAAAGACTGATCTTCGCCGGAAAGCAGTTGGAAGATGGACGAACACTTGCCGATTACAA 6811258 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 |||||||||||| |||| || ||||| || Sbjct 6811257 CATCCAGAAGGAATCCACTCTTCATCTTGT 6811228 Score = 102 bits (112), Expect = 8e-17 Identities = 150/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || ||||| || || ||||||||| | || || || | || Sbjct 6811892 ATGCAAATCTTCGTTAAGACCCTCACAGGAAAGACCATCACCCTTGAGGTGGAGTCTTCC 6811833 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| | |||| ||||| | || || || || || || |||| || Sbjct 6811832 GACACCATCGACAACGTT-AAGGCTAAAATCCAGGATAAGGAAGGGATTCCACCGGATCA 6811774 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||||||| | |||| ||| ||||| || || || || | || || || |||||||| Sbjct 6811773 GCAACGATTGATCTTCGCCGGCAAGCAACTTGAGGATGGCCGAACTCTTGCAGACTACAA 6811714 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||||||||| || | || || || || || Sbjct 6811713 CATCCAGAAAGAATCAACTCTTCACCTTGT 6811684 Score = 95.1 bits (104), Expect = 1e-14 Identities = 149/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || |||||||| || || || || || |||||| | || || || | | Sbjct 6811664 ATGCAGATCTTTGTAAAAACCCTTACCGGAAAGACAATCACCCTTGAGGTGGAGTCTTCT 6811605 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| | ||| || | | | || || || || |||||| ||||||| Sbjct 6811604 GACACTATTGACAACGTTAAAGCCAAGA-TCCAGGATAAGGAAGGAATCCCCCCGGACCA 6811546 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||||||| | |||| ||| || || || || || |||| || ||||| ||| ||||| Sbjct 6811545 GCAACGATTGATCTTCGCTGGAAAGCAACTTGAGGACGGCCGAACCCTTGCCGATTACAA 6811486 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTG 40899 ||||||||||| | || || || || ||| Sbjct 6811485 TATCCAGAAGGAATCAACTCTCCACCTCGTG 6811455 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515217976354400