Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20sativus_20[refseq_20GCF_5F000004075.2_202014-10-27] 190 sequences; 195,669,205 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq6 136 3e-27 seq3 125 6e-24 seq2 123 2e-23 seq5 107 2e-18 seq1 104 2e-17 >seq6 Length=29076228 Score = 136 bits (150), Expect = 3e-27 Identities = 156/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||| ||||| |||||||| || || ||||| || ||| || ||| || ||||||| Sbjct 26767812 ACCAGGTGGAGGGTAGACTCCTTCTGGATGTTATAGTCGGCCAAAGTACGGCCATCCTCG 26767871 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 || || ||||||||| |||| |||||||| || || ||||| |||||||| ||||| Sbjct 26767872 AGTTGCTTTCCAGCGAAGATAAGACGCTGTTGGTCTGGAGGAATGCCCTCTTTGTCCTGG 26767931 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | |||| |||||| | ||| ||||| | ||| | || ||| Sbjct 26767932 ATCTTGGCCTTTACGTTGTCGATGGTGTCAGACGACTCAACCTCAAGGGTGATGGTCTTG 26767991 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 || ||||| ||||| || |||||||||||| Sbjct 26767992 CCCGTCAGGGTTTTCACGAAAATCTGCATG 26768021 Score = 122 bits (134), Expect = 8e-23 Identities = 145/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || ||||| || |||||||||||||| | ||| | | ||| || ||||| || ||| Sbjct 26766912 GTGGACTCCTTCTGAATGTTGTAATCAGCGAGAGTCCTCCCATCTTCAAGCTGCTTCCCA 26766971 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 ||| |||| | | |||||| || ||||| ||||| |||||||| |||||| ||| Sbjct 26766972 GCGAAGATCAACCTCTGCTGGTCCGGAGGGATGCCTTCCTTGTCCTGAATTTTAGCTTTC 26767031 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | |||| ||||| | |||||| ||||| | ||| | || || || ||||| || Sbjct 26767032 ACATTATCGATCGTGTCGGAGCTCTCCACCTCCAAGGTGATGGTCTTTCCAGTCAGGGTC 26767091 Query 118722 TTTACAAAAATCTGCAT 118738 || |||||||| ||||| Sbjct 26767092 TTAACAAAAATTTGCAT 26767108 Score = 118 bits (130), Expect = 9e-22 Identities = 152/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 |||||| || | || ||||| || |||||||||||||| || ||| | ||| || Sbjct 26767127 CACCAAATGCAAGGTTGACTCCTTCTGAATGTTGTAATCAGCCAGAGTCCTTCCATCTTC 26767186 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 ||||| || |||||| |||| | | |||||| || || || || |||||||||||| Sbjct 26767187 AAGCTGCTTCCCAGCGAAGATCAACCTCTGCTGGTCTGGTGGGATTCCCTCCTTGTCTTG 26767246 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 || || || || | || | |||||| | |||||| ||||| | ||| | || || Sbjct 26767247 GATCTTAGCCTTGACGTTATCAATGGTGTCAGAGCTCTCAACCTCTAGGGTGATGGTCTT 26767306 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||||| || || |||||||||||||| Sbjct 26767307 TCCGGTCAACGTCTTGACAAAAATCTGCAT 26767336 Score = 107 bits (118), Expect = 2e-18 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 118535 GTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTG 118594 ||||| || ||||| || || |||||||| ||| || || || ||||||||| || Sbjct 26768045 GTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCCAAGGTACGGCCATCCTCGAGTTG 26768104 Query 118595 TTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTT 118654 |||||||||| |||||||||| |||||||| || || || || |||||||| || || Sbjct 26768105 TTTTCCAGCGAAGATGAGACGTTGCTGATCCGGGGGAATTCCTTCCTTGTCCTGGATCTT 26768164 Query 118655 TTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGT 118714 || || | |||| || || | ||| ||||| | ||| | || || ||||| Sbjct 26768165 GGCCTTGACGTTGTCGATCGTATCAGACGACTCAACCTCAAGGGTGATTGTCTTACCGGT 26768224 Query 118715 CAGAGTTTTTACAAAAATCTGCAT 118738 || ||||| || || || ||||| Sbjct 26768225 TAGGGTTTTAACGAAGATTTGCAT 26768248 Score = 98.7 bits (108), Expect = 9e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||| || || | | |||||| | ||||| || ||||| || || |||||||||||| Sbjct 26767336 TACCACCACGAAGACGCAACACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAATCGG 26767395 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 | || || ||||| || || || || || |||| || | || || || || | Sbjct 26767396 CAAGGGTACGACCGTCCTCTAGTTGCTTACCGGCAAAGATAAGTCTTTGTTGGTCTGGGG 26767455 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689 | || ||||||||||| || || || || | || | |||||| | |||||| | Sbjct 26767456 GAATTCCCTCCTTGTCCTGGATCTTAGCCTTGACGTTGTCAATGGTGTCAGAGCTCTCAA 26767515 Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||| | ||| | || || ||||||| || || |||||||||||||| Sbjct 26767516 CCTCTAGGGTGATGGTCTTTCCGGTCAACGTCTTGACAAAAATCTGCAT 26767564 Score = 89.7 bits (98), Expect = 4e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||| || || | | |||||| | ||||| || ||||| || || ||||| ||||| Sbjct 26767564 TACCACCACGAAGACGCAACACAAGGTGGAGGGTGGACTCCTTCTGGATGTTATAATCAG 26767623 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 | || || ||||| || || || || || ||||||| | || || || || | Sbjct 26767624 CAAGGGTACGGCCGTCCTCTAGTTGCTTACCGGCAAAGATGAGTCTTTGTTGGTCTGGGG 26767683 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689 | || ||||||||||| || ||| || || | |||| ||| || | | |||| Sbjct 26767684 GAATTCCCTCCTTGTCCTGGATCTTTGCCTTCACGTTATCGATGGTATCAGAGGATTCGA 26767743 Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||||| ||| | ||||| || ||||| || || || ||||| ||||| Sbjct 26767744 CCTCGAGGGTGATGGTTTTACCCGTCAGGGTCTTAACGAAAATTTGCAT 26767792 >seq3 Length=39782674 Score = 125 bits (138), Expect = 6e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 || ||||| | ||| | |||||| |||| |||||| || || || || ||||||||| Sbjct 19995638 CCACCGCGAAGTCTAAGCACCAAATGGAGTGTAGATTCCTTCTGGATATTGTAATCGGCA 19995579 Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631 | || || ||||| || || || ||||| |||| || | ||| || ||||| || Sbjct 19995578 AGCGTTCGGCCGTCCTCAAGTTGCTTACCAGCAAAGATAAGCCTCTGTTGGTCGGGTGGA 19995519 Query 118632 ATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACC 118691 |||||||| || ||| ||||||| || || | || | || || | ||| || ||| Sbjct 19995518 ATGCCCTCTTTATCTTGAATTTTTGCCTTTACATTGTCAATTGTATCAGAGCTTTCCACC 19995459 Query 118692 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||| ||| | |||||||| || ||||||||||| || || ||||| Sbjct 19995458 TCGAGGGTGATTGTTTTGCCAGTGAGAGTTTTTACGAATATTTGCAT 19995412 Score = 111 bits (122), Expect = 1e-19 Identities = 147/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 118535 GTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTG 118594 ||||| || ||||| |||||||||||||||||| || || || |||||| | || Sbjct 4360599 GTGGAGGGTGGACTCCTTTTGAATGTTGTAATCGGCCAGTGTACGTCCATCCTCCAATTG 4360658 Query 118595 TTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTT 118654 ||||||||| | || || | ||||| || ||||| || ||||||||||| ||||| Sbjct 4360659 CTTTCCAGCGAAAATTAGTCTTTGCTGGTCAGGAGGGATACCCTCCTTGTCCTGGATTTT 4360718 Query 118655 TTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGT 118714 ||||| | || | |||||| | |||||| ||||| | || | || || || || Sbjct 4360719 AGCCTTAACGTTATCAATGGTGTCTGAGCTCTCAACCTCCAATGTGATGGTCTTTCCTGT 4360778 Query 118715 CAGAGTTTTTACAAAAATCTGCAT 118738 || || || ||||| || ||||| Sbjct 4360779 CAAGGTCTTCACAAATATTTGCAT 4360802 Score = 102 bits (112), Expect = 7e-17 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 118535 GTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTG 118594 ||||| ||| |||||||| || || |||||||| || || || |||||| | || Sbjct 19996299 GTGGAGTGTGGACTCTTTCTGGATATTGTAATCAGCCAATGTCCGACCATCCTCCAATTG 19996240 Query 118595 TTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTT 118654 ||||||||| |||| || | ||| ||||| ||||| || ||||| |||||| ||| || Sbjct 19996239 TTTTCCAGCAAAGATCAGTCTCTGTTGATCTGGAGGAATCCCCTCTTTGTCTTGAATCTT 19996180 Query 118655 TTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGT 118714 || || | || | |||||||| || ||||| || | || | || || || || Sbjct 19996179 CGCCTTCACATTGTCAATGGTGTCCGAACTTTCGACTTCCAATGTGATTGTCTTCCCTGT 19996120 Query 118715 CAGAGTTTTTACAAAAATCTGCAT 118738 | || || || ||||||||||| Sbjct 19996119 TAATGTCTTCACGAAAATCTGCAT 19996096 Score = 98.7 bits (108), Expect = 9e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 ||||| || | ||||| || || ||||| ||||| || | ||| || ||||||| Sbjct 19995848 ACCAAATGCAGAGTAGATTCCTTCTGAATATTGTAGTCAGCGAGAGTTCGACCATCCTCG 19995789 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| || ||||| | || || | ||| || || || ||||| || ||||||||| | Sbjct 19995788 AGCTGCTTACCAGCAAAAATAAGTCTCTGTTGGTCAGGTGGTATACCTTCCTTGTCTTGA 19995729 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 ||||| || || | || | ||| || | || || ||||| | ||| | |||||| Sbjct 19995728 ATTTTAGCCTTGACATTGTCAATGGTATCAGAACTTTCCACCTCAAGGGTAATGGTTTTG 19995669 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || || || || ||||| || ||||| Sbjct 19995668 CCAGTAAGGGTCTTCACAAATATTTGCAT 19995640 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 || ||||| |||| | ||| || || | || || || ||||||||||| ||||| | Sbjct 19996094 CCACCGCGCAATCGGAGCACTAAATGCAACGTTGATTCCTTTTGAATGTTATAATCTGCC 19996035 Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631 | ||| | ||| || ||||| || ||||| | || | | ||| || || || || Sbjct 19996034 AGAGTCCTGCCATCTTCAAGCTGCTTACCAGCAAAAATCAACCTCTGTTGGTCCGGTGGA 19995975 Query 118632 ATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACC 118691 || |||||||| ||| || || ||| || | || | || || | |||||| || Sbjct 19995974 ATACCCTCCTTATCTTGGATCTTAGCTTTCACATTATCAATTGTATCAGAGCTCTCCACT 19995915 Query 118692 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || | ||| | ||||| ||||| | ||||| |||||||| ||||| Sbjct 19995914 TCCAAGGTAATTGTTTTCCCGGTTAAGGTTTTCACAAAAATTTGCAT 19995868 >seq2 Length=23174626 Score = 123 bits (136), Expect = 2e-23 Identities = 153/208 (74%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 118532 CAAG-TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGA 118590 |||| |||| ||||| || || || |||||||| ||| | || || |||||| | Sbjct 15735227 CAAGATGGAGCGTAGATTCCTTCTGGATGTTGTAGTCGGCAAGTGTTCGACCATCCTCCA 15735286 Query 118591 GCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAA 118650 |||| || || ||| |||||||||||||||| || || ||||| || |||||||| || Sbjct 15735287 GCTGCTTACCGGCGAAGATGAGACGCTGCTGGTCAGGCGGTATTCCTTCCTTGTCCTGAA 15735346 Query 118651 TTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGC 118710 | ||| || || | |||| ||| || | ||||||||||||| || | || || | Sbjct 15735347 TCTTTGCCTTGACATTATCGATGGTATCAGAACTCTCGACCTCGAGAGTTATGGTCTTCC 15735406 Query 118711 CGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||| || ||||| || || |||||||| Sbjct 15735407 CGGTAAGCGTTTTCACGAAGATCTGCAT 15735434 >seq5 Length=28023477 Score = 107 bits (118), Expect = 2e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||| | ||||| || || || || ||||||||||| ||| | || || ||||| Sbjct 21960176 CACAAGGTGGAGCGTGGATTCCTTCTGAATGTTGTAGTCGGCTAGTGTTCGGCCGTCCTC 21960117 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 ||||| ||||| ||| | || | ||||||||| || ||||| || || |||||||| Sbjct 21960116 AAGCTGCTTTCCGGCGAAAATCAAACGCTGCTGGTCCGGAGGGATTCCTTCCTTGTCCTG 21960057 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 || ||| || || | |||| ||| || | ||||||||| |||| || | || || Sbjct 21960056 GATCTTTGCCTTGACATTGTCGATGGTATCGGAGCTCTCGACTTCGAGAGTGATGGTCTT 21959997 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCATGG 118740 || || || ||||| || || |||||||||| Sbjct 21959996 ACCCGTTAGGGTTTTCACGAAGATCTGCATGG 21959965 >seq1 Length=29149675 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || ||||| ||||||||||||||||| || ||| | |||||| ||||| ||||| Sbjct 6810881 GTGGACTCCTTTTGAATGTTGTAATCCGCCAGAGTCCTTCCATCCTCCAGCTGCTTTCCG 6810940 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 || |||| | | |||||| || || || ||||| |||||||| ||| || || Sbjct 6810941 GCAAAGATCAACCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTCCTGAATCTTGGCCTTC 6811000 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | || | ||||| | ||| ||||| | ||| | || || ||||| |||||| Sbjct 6811001 ACGTTGTCAATTGTGTCTGAAGACTCAACCTCCAAGGTAATGGTCTTTCCGGTGAGAGTT 6811060 Query 118722 TTTACAAAAATCTGCAT 118738 || |||||||| ||||| Sbjct 6811061 TTGACAAAAATTTGCAT 6811077 Score = 87.8 bits (96), Expect = 2e-12 Identities = 146/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||| | ||||| || || || || || || ||||||||| | || || ||||| Sbjct 6811455 CACGAGGTGGAGAGTTGATTCCTTCTGGATATTGTAATCGGCAAGGGTTCGGCCGTCCTC 6811514 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 || || ||||||||| |||| | || ||||| || || || || || ||||| || Sbjct 6811515 AAGTTGCTTTCCAGCGAAGATCAATCGTTGCTGGTCCGGGGGGATTCCTTCCTTATCCTG 6811574 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 || || |||||| | || | ||||| | ||| ||||| | ||| | || || Sbjct 6811575 GATCTTGGCTTTAACGTTGTCAATAGTGTCAGAAGACTCCACCTCAAGGGTGATTGTCTT 6811634 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 ||||| || ||||||||||| ||||||||| Sbjct 6811635 TCCGGTAAGGGTTTTTACAAAGATCTGCATG 6811665 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433829395411480