Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20sativus_20[refseq_20GCF_5F000004075.2_202014-10-27] 190 sequences; 195,669,205 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq6 120 3e-22 seq3 105 8e-18 seq5 96.9 4e-15 seq1 91.5 2e-13 >seq6 Length=29076228 Score = 120 bits (132), Expect = 3e-22 Identities = 147/197 (75%), Gaps = 8/197 (4%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| ||||| ||||||||||| ||||||| | | || || |||||||| |||||||| Sbjct 26766917 CTCCTTCTGAATGTTGTAATCAGCGAGAGTCCTCCCATCTTCAAGCTGCTTCCCAGCGAA 26766976 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 43110 || | | ||||||||| | || | || ||||||||| ||| |||| | ||| | Sbjct 26766977 GATCAACCTCTGCTGGTCCGGAGGGATGCCTTCCTTGTCC-TGAATTTTAGCTTTCACAT 26767035 Query 43111 TCGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCT 43167 | | | |||||| |||| ||||| || | |||||||| || || || || |||| Sbjct 26767036 TATCGATCGTGTCGGAGCTC---TCCACCTCCAAGGTGATGGTCTTTCCAGTCAGGGTCT 26767092 Query 43168 TTACAAAGATTTGCATT 43184 | ||||| ||||||||| Sbjct 26767093 TAACAAAAATTTGCATT 26767109 Score = 116 bits (128), Expect = 4e-21 Identities = 165/231 (71%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 42956 TCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 43015 ||| || || | ||| | |||||||||||| || |||||| ||||| ||||||||||| Sbjct 26767109 TCCACCCCTGAGACGAAGCACCAAATGCAAGGTTGACTCCTTCTGAATGTTGTAATCAGC 26767168 Query 43016 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGG 43075 |||||||| | || || |||||||| |||||||| || | | ||||||||| | || Sbjct 26767169 CAGAGTCCTTCCATCTTCAAGCTGCTTCCCAGCGAAGATCAACCTCTGCTGGTCTGGTGG 26767228 Query 43076 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTC---GCTCGATTC 43132 | | ||||||||| ||| || |||| | | | ||||| |||| || Sbjct 26767229 GATTCCCTCCTTGTCTTGGATCTTAGCCTTGACGTTATCAATGGTGTCAGAGCTC---TC 26767285 Query 43133 CACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || || | |||||||| || || || | |||||| ||||| || ||||| Sbjct 26767286 AACCTCTAGGGTGATGGTCTTTCCGGTCAACGTCTTGACAAAAATCTGCAT 26767336 Score = 111 bits (122), Expect = 2e-19 Identities = 154/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 ||||||||| | || | ||| |||||| || || || |||||||| || || || | Sbjct 26767577 ACGCAACACAAGGTGGAGGGTGGACTCCTTCTGGATGTTATAATCAGCAAGGGTACGGCC 26767636 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 ||| ||||| |||||||| || || ||||||| || ||||| | || | | |||||| Sbjct 26767637 GTCCTCTAGTTGCTTACCGGCAAAGATGAGTCTTTGTTGGTCTGGGGGAATTCCCTCCTT 26767696 Query 43088 GTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGAT 43147 |||| ||| ||| || | | | | || || ||||| || |||| ||||| Sbjct 26767697 GTCCTGGATCTTTGCCTTCACGTTATCGATGGTATCAGAGGATTCGACCTCGAGGGTGAT 26767756 Query 43148 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 |||||| ||||| || ||||| || || |||||||| Sbjct 26767757 GGTTTTACCCGTCAGGGTCTTAACGAAAATTTGCAT 26767792 >seq3 Length=39782674 Score = 105 bits (116), Expect = 8e-18 Identities = 151/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 42975 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 43034 |||||||||| || ||||| ||||||||||| ||||| ||||| || | || || Sbjct 19995848 ACCAAATGCAGAGTAGATTCCTTCTGAATATTGTAGTCAGCGAGAGTTCGACCATCCTCG 19995789 Query 43035 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 43094 |||||||||||||| || || |||| ||| ||||| | || | | ||||||| | || Sbjct 19995788 AGCTGCTTACCAGCAAAAATAAGTCTCTGTTGGTCAGGTGGTATACCTTCCTTGT-CTTG 19995730 Query 43095 ATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTT 43153 | |||| | |||| | | | || || |||||| || | || |||||||| Sbjct 19995729 AATTTTAGCCTTGACATTGTCAATGGTATCAGAACTTTCCACCTCAAGGGTAATGGTTTT 19995670 Query 43154 GCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 ||| || || ||||| ||||| |||||||| Sbjct 19995669 GCCAGTAAGGGTCTTCACAAATATTTGCAT 19995640 Score = 93.3 bits (102), Expect = 5e-14 Identities = 139/196 (71%), Gaps = 6/196 (3%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||||||||| |||||||| ||||| || || | || || | ||||| |||||||| Sbjct 4360611 CTCCTTTTGAATGTTGTAATCGGCCAGTGTACGTCCATCCTCCAATTGCTTTCCAGCGAA 4360670 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 || |||| |||||||| | || | | |||||||||| |||||| || | | Sbjct 4360671 AATTAGTCTTTGCTGGTCAGGAGGGATACCCTCCTTGTCCTGGATTTTAGCCTTAACGTT 4360730 Query 43112 CGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTT 43168 | | ||||| |||| || || || | |||||||| || || || | ||||| Sbjct 4360731 ATCAATGGTGTCTGAGCTC---TCAACCTCCAATGTGATGGTCTTTCCTGTCAAGGTCTT 4360787 Query 43169 TACAAAGATTTGCATT 43184 ||||| ||||||||| Sbjct 4360788 CACAAATATTTGCATT 4360803 Score = 84.2 bits (92), Expect = 3e-11 Identities = 152/221 (69%), Gaps = 6/221 (3%) Strand=Plus/Minus Query 42966 AAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGC 43025 || || | ||| |||||||| || ||||||||||| || ||||| |||||||||| Sbjct 19996085 AATCGGAGCACTAAATGCAACGTTGATTCCTTTTGAATGTTATAATCTGCCAGAGTCCTG 19996026 Query 43026 TCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCC 43085 | || || |||||||||||||| || || | | ||| ||||| | || | | |||| Sbjct 19996025 CCATCTTCAAGCTGCTTACCAGCAAAAATCAACCTCTGTTGGTCCGGTGGAATACCCTCC 19995966 Query 43086 TTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCGACC 43142 || || ||| || ||| | | | | || || |||| ||||| || | Sbjct 19995965 TTATCTTGGATCTTAGCTTTCACATTATCAATTGTATCAGAGCTC---TCCACTTCCAAG 19995909 Query 43143 GTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || || ||||| || |||| || || ||||| |||||||| Sbjct 19995908 GTAATTGTTTTCCCGGTTAAGGTTTTCACAAAAATTTGCAT 19995868 >seq5 Length=28023477 Score = 96.9 bits (106), Expect = 4e-15 Identities = 160/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 |||||||| | ||| | ||| | || | ||| ||||| ||||| ||||| || || Sbjct 21960193 CCTCCTCTGAGACGGAGCACAAGGTGGAGCGTGGATTCCTTCTGAATGTTGTAGTCGGCT 21960134 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 || || || |||| || |||||||| || ||||| || | ||||||||||| | || Sbjct 21960133 AGTGTTCGGCCGTCCTCAAGCTGCTTTCCGGCGAAAATCAAACGCTGCTGGTCCGGAGGG 21960074 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTC---GCTCGATTCC 43133 | | ||||||||| ||| ||| |||| | | | || || |||| || Sbjct 21960073 ATTCCTTCCTTGTCCTGGATCTTTGCCTTGACATTGTCGATGGTATCGGAGCTC---TCG 21960017 Query 43134 ACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || |||| |||||||| || |||||||| || || || ||||| ||||| Sbjct 21960016 ACTTCGAGAGTGATGGTCTTACCCGTTAGGGTTTTCACGAAGATCTGCAT 21959967 Score = 84.2 bits (92), Expect = 3e-11 Identities = 61/71 (86%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 60061 ATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCAC 60120 ||| || || | || ||| ||||||||| |||| |||||||||||||||| |||||||| Sbjct 3901566 ATTATCGCCGCTGCCGGGGATCGAACCCGGGTCACCCGCGTGACAGGCGGGAATACTCAC 3901625 Query 60121 CACTATACTAC 60131 ||||||||||| Sbjct 3901626 CACTATACTAC 3901636 >seq1 Length=29149675 Score = 91.5 bits (100), Expect = 2e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 42956 TCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 43015 |||||| || | ||| | || | || | ||| |||||||||||| |||||||| || Sbjct 6810850 TCCTCCCCTCAGACGAAGAACAAGGTGAAGGGTGGACTCCTTTTGAATGTTGTAATCCGC 6810909 Query 43016 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGG 43075 |||||||| | || || |||||||| || || || || | | ||||||||| | || Sbjct 6810910 CAGAGTCCTTCCATCCTCCAGCTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCTGGGGG 6810969 Query 43076 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCA 43134 | || ||||||||| ||| | || | | ||| | | | ||||| || || | Sbjct 6810970 AATGCCTTCCTTGTCC-TGAATCTTGGCCTTCACGTTGTCAATTGTGTCTGAAGACTCAA 6811028 Query 43135 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 | || | || ||||| || || || || || || ||||| |||||||| Sbjct 6811029 CCTCCAAGGTAATGGTCTTTCCGGTGAGAGTTTTGACAAAAATTTGCAT 6811077 Score = 91.5 bits (100), Expect = 2e-13 Identities = 137/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052 ||||| || ||||||||||| || || || || |||| || || ||||| |||||||| Sbjct 6811474 TCCTTCTGGATATTGTAATCGGCAAGGGTTCGGCCGTCCTCAAGTTGCTTTCCAGCGAAG 6811533 Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 43112 || | ||| |||||||| | || | | ||||| ||| || | || | || | ||| Sbjct 6811534 ATCAATCGTTGCTGGTCCGGGGGGATTCCTTCCTTATCC-TGGATCTTGGCTTTAACGTT 6811592 Query 43113 G-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | | | ||||| || ||||| || | ||||| || || || || || || ||||| Sbjct 6811593 GTCAATAGTGTCAGAAGACTCCACCTCAAGGGTGATTGTCTTTCCGGTAAGGGTTTTTAC 6811652 Query 43172 AAAGATTTGCAT 43183 |||||| ||||| Sbjct 6811653 AAAGATCTGCAT 6811664 Score = 84.2 bits (92), Expect = 3e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052 ||||| || || |||||||| || || || || | || || | |||||| || ||||| Sbjct 6811246 TCCTTCTGGATGTTGTAATCGGCAAGTGTTCGTCCATCTTCCAACTGCTTTCCGGCGAAG 6811305 Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 43112 || |||| |||||||| | || | | ||||| ||| ||| || |||| | Sbjct 6811306 ATCAGTCTTTGCTGGTCTGGGGGAATACCTTCCTTATCCTGGATCTTGGCCTTGACGTTA 6811365 Query 43113 GCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 43172 | | || ||| || ||||| |||| ||||| || || || || || ||||| ||| Sbjct 6811366 TCAATGGTATCGGAGGACTCCACCTCGAGGGTGATAGTCTTTCCGGTAAGAGTCTTGACA 6811425 Query 43173 AAGATTTGCAT 43183 ||||||||||| Sbjct 6811426 AAGATTTGCAT 6811436 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571816241933200