Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20sativus_20[refseq_20GCF_5F000004075.2_202014-10-27] 190 sequences; 195,669,205 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq3 100 4e-16 seq6 98.7 1e-15 seq1 95.1 2e-14 >seq3 Length=39782674 Score = 100 bits (110), Expect = 4e-16 Identities = 160/238 (67%), Gaps = 0/238 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| | |||||| | |||||||| | |||||||| || ||||| ||||| | | Sbjct 19995638 CCACCGCGAAGTCTAAGCACCAAATGGAGTGTAGATTCCTTCTGGATATTGTAATCGGCA 19995579 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 || |||| || || || | ||| || |||||||| || | || || || || || ||| Sbjct 19995578 AGCGTTCGGCCGTCCTCAAGTTGCTTACCAGCAAAGATAAGCCTCTGTTGGTCGGGTGGA 19995519 Query 146171 ATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACT 146230 || || ||||||||||| ||||| || ||||| || Sbjct 19995518 ATGCCCTCTTTATCTTGAATTTTTGCCTTTACATTGTCAATTGTATCAGAGCTTTCCACC 19995459 Query 146231 TCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCATTTTATTAGAAA 146288 || || ||||||||||| || || | ||||| | |||||||||||| | | ||||| Sbjct 19995458 TCGAGGGTGATTGTTTTGCCAGTGAGAGTTTTTACGAATATTTGCATCTGTTAAGAAA 19995401 Score = 96.9 bits (106), Expect = 5e-15 Identities = 144/210 (69%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 146069 ACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATC 146127 || ||||| || || ||||| ||| || || |||||||||| ||||| |||| ||| || Sbjct 19996076 ACTAAATGCAACGTTGATTCCTTTTGA-ATGTTATAATCTGCCAGAGTCCTGCCATCTTC 19996018 Query 146128 TAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 | || || |||||||||||||| || || || ||||| ||||| || || |||||||| Sbjct 19996017 AAGCTGCTTACCAGCAAAAATCAACCTCTGTTGGTCCGGTGGAATACCCTCCTTATCTTG 19995958 Query 146188 NNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACTTCTAGTGTGATTGTTTT 146247 ||||| || || || ||||| | || |||||||| Sbjct 19995957 GATCTTAGCTTTCACATTATCAATTGTATCAGAGCTCTCCACTTCCAAGGTAATTGTTTT 19995898 Query 146248 ACCTGTTAATGTTTTAATGAATATTTGCAT 146277 || ||||| ||||| | || |||||||| Sbjct 19995897 CCCGGTTAAGGTTTTCACAAAAATTTGCAT 19995868 >seq6 Length=29076228 Score = 98.7 bits (108), Expect = 1e-15 Identities = 108/141 (77%), Gaps = 2/141 (1%) Strand=Plus/Plus Query 146048 GTTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATC 146106 || || || ||||| || || ||||| || | || || || ||| || || |||||||| Sbjct 9620087 GTACCTCCCCTAAGCCTCAAAACCAAGTGAAGGGTTGACTCCTTTTGA-ATGTTATAATC 9620145 Query 146107 TGAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGG 146166 || ||| |||| | ||| || ||||| || ||||||||||| ||||| ||||| || || Sbjct 9620146 TGCAAGCGTTCGACCATCTTCCAATTGCTTACCAGCAAAAATTAATCTCTGCTGGTCAGG 9620205 Query 146167 AGGAATTCCTTCTTTATCTTG 146187 |||||| ||||| || || || Sbjct 9620206 AGGAATACCTTCCTTGTCCTG 9620226 >seq1 Length=29149675 Score = 95.1 bits (104), Expect = 2e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| | ||| |||| || | || | ||| |||||||| || || || |||| | Sbjct 6811666 CCACCACGAAGCCTTAGGACAAGGTGAAGAGTTGATTCTTTCTGGATGTTGTAGTCTGCA 6811725 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 ||||||| || ||| || | ||| || || || || ||||||| |||||||||||| ||| Sbjct 6811726 AGAGTTCGGCCATCCTCAAGTTGCTTGCCGGCGAAGATCAATCGTTGCTGATCCGGTGGA 6811785 Query 146171 ATTCCTTCTTTATCTTG 146187 || ||||| ||||| || Sbjct 6811786 ATCCCTTCCTTATCCTG 6811802 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743524634124800