Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20sativus_20[refseq_20GCF_5F000004075.2_202014-10-27] 190 sequences; 195,669,205 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq3 172 5e-38 >seq3 Length=39782674 Score = 172 bits (190), Expect = 5e-38 Identities = 464/701 (66%), Gaps = 23/701 (3%) Strand=Plus/Minus Query 15912 CATTATCTTTTTTATTTGACATAACTGACATTTTTTGATATTCACTAACTCTCTTTTCAA 15971 |||| | ||| ||||||||| || || ||||||||||| | |||||| || |||| Sbjct 22913734 CATTTCCATTTAGATTTGACATCACAGATGCCTTTTGATATTCCCCAACTCTTTTCTCAA 22913675 Query 15972 AGAAATTTGTTTTTCCTTCTAATGAAATATTTTCCATAAAATCAAAAGGATTTTTTGAAC 16031 ||||||| || || |||| || ||||| ||||| ||||||| ||||||| | || Sbjct 22913674 AGAAATTAGTCTTCCCTTGCAAGGAAATCAACTCCATCCAATCAAATGGATTTT--GCAC 22913617 Query 16032 AAT--AGTATTTATCGCATCCCAAT--TCCAACAATAATCTATCCGCCACAAATTCTATA 16087 | | || ||| || | |||||| |||||| | ||||||| ||||||||||| || Sbjct 22913616 ATTGTAGATTTTGTCATACCCCAATGCTCCAACCA--ATCTATCTGCCACAAATTCAATG 22913559 Query 16088 TACTGTTTCATTAAATCACAGTTCATTCCTATTAATTTAACAGGGATTGCTTCTGTTAAA 16147 || || |||| | || | |||||||| | || || || | || || | Sbjct 22913558 TATTGGCTCATAAGGTCTCCATTCATTCCAACTAGAGCCACCGGCAAAGCATCACAAACG 22913499 Query 16148 AAAtttttttCTATATTAACCGCTTCAATGATTATATCTCTTACTA----CACTATTTAA 16203 || | | |||||||| || || || || | || || | ||| ||| ||| || Sbjct 22913498 AATTCCCTCTCTATATTCACAGCCTCCATAACAATCTCCTTCACTCGATCCAC-ATTCAA 22913440 Query 16204 CGGAGGGTTTAATAAGTGTTTAAACATTATACAAGCAAAATCACAATGCAATCCTTCGTC 16263 | || || | |||| ||| |||||||||||||| | ||||| || Sbjct 22913439 TTTCTTCCTCAACAACGAATACAACAA---ACATGCAAAATCACAATGAAGACCTTCATC 22913383 Query 16264 CCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTAATCC- 16322 || || ||||||||||| ||||| || || ||||||| || |||||||| | || Sbjct 22913382 TCTTGAAATCAACTCGTTTGAGAATGTTAGTCCAGGCATTAACCCACGTTTTTTCAACCA 22913323 Query 16323 -AAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCAACC 16381 |||||| | | | || | ||| || ||||| || || ||||| |||||||| | Sbjct 22913322 GAAAATAGAACAGAAACT--ACCTGAGAAGAAAATTCCCTCAACACAAGCAAATGCCAAA 22913265 Query 16382 AATCGCTCACCGTACGTTCTAtttttactttctatccattttttagcccaatttgctttt 16441 | |||||| | | | | | || || ||||| || ||||||| || || Sbjct 22913264 ATCCGCTCAGCAAA---TGACTCCGTGCTGTCAATCCACTTCAACGCCCAATCGGCCTTC 22913208 Query 16442 tgtttAACACAGTTCATGTTCTCTATTGCATTAAATAAATAAtttttttCTTTGCTATCT 16501 | || |||||| | | || || |||| ||| || ||| || || || |||| Sbjct 22913207 TTCTTGACACAGGGGACAGTATCAATAGCATGAAACAAGCGATTCTTCTCATTCGAATCT 22913148 Query 16502 AAAATATAAGTATCTATTAGTAAACTATACATTTCTGAATGAATATTCTCCATTGCTATC 16561 || ||||| || | || | ||||||||| || |||||||| ||||| || || || Sbjct 22913147 TTGATGTAAGTTTCGAGGAGAAGACTATACATCTCGGAATGAATGTTCTCGATAGCAATT 22913088 Query 16562 TGAAAACCATAAAAGCATCTAGCTTCGGATATTTGTACTTC 16602 || ||||| || ||| ||| |||| | | ||| ||||| Sbjct 22913087 TGGAAACCGTAGAAGGCTCTGACTTCAGCGACTTGAACTTC 22913047 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462510901534000