Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20sativus_20[refseq_20GCF_5F000004075.2_202014-10-27] 190 sequences; 195,669,205 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq3 111 1e-19 seq5 109 4e-19 seq6 98.7 8e-16 seq1 98.7 8e-16 seq2 95.1 1e-14 >seq3 Length=39782674 Score = 111 bits (122), Expect = 1e-19 Identities = 147/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192 ||| || ||| |||||| ||||||||||| ||| |||| || | || |||| ||| Sbjct 4360599 GTGGAGGGTGGACTCCTTTTGAATGTTGTAATCGGCCAGTGTACGTCCATCCTCCAATTG 4360658 Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252 ||||| ||||| || | | || ||||| ||||| | ||||||||||||| ||||| Sbjct 4360659 CTTTCCAGCGAAAATTAGTCTTTGCTGGTCAGGAGGGATACCCTCCTTGTCCTGGATTTT 4360718 Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312 |||||| | | | |||| | ||| ||||||| || || ||||| || || Sbjct 4360719 AGCCTTAACGTTATCAATGGTGTCTGAGCTCTCAACCTCCAATGTGATGGTCTTTCCTGT 4360778 Query 45313 CAGAGTCTTCACAAAGATTTGCAT 45336 || ||||||||||| |||||||| Sbjct 4360779 CAAGGTCTTCACAAATATTTGCAT 4360802 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 ||||| ||||| || ||||||||||| |||||||| || ||| | || || Sbjct 19995848 ACCAAATGCAGAGTAGATTCCTTCTGAATATTGTAGTCAGCGAGAGTTCGACCATCCTCG 19995789 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || || || || || | | ||||||||| || || | ||| |||||||| | Sbjct 19995788 AGCTGCTTACCAGCAAAAATAAGTCTCTGTTGGTCAGGTGGTATACCTTCCTTGTCTTGA 19995729 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 ||||| ||| || | | | | || || |||||||| | |||||| || ||| Sbjct 19995728 ATTTTAGCCTTGACATTGTCAATGGTATCAGAACTTTCCACCTCAAGGGTAATGGTTTTG 19995669 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || || || ||||||||||| |||||||| Sbjct 19995668 CCAGTAAGGGTCTTCACAAATATTTGCAT 19995640 >seq5 Length=28023477 Score = 109 bits (120), Expect = 4e-19 Identities = 147/205 (72%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192 ||| |||||| ||||||||||||||||||||| ||| || |||| || || || Sbjct 21960170 GTGGAGCGTGGATTCCTTCTGAATGTTGTAGTCGGCTAGTGTTCGGCCGTCCTCAAGCTG 21960111 Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252 ||||||||||| ||||| ||||| ||||| ||||| | || ||||||||| || || Sbjct 21960110 CTTTCCGGCGAAAATCAAACGCTGCTGGTCCGGAGGGATTCCTTCCTTGTCCTGGATCTT 21960051 Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312 | ||| || | | | | || | ||| || || | || || ||||| ||||| Sbjct 21960050 TGCCTTGACATTGTCGATGGTATCGGAGCTCTCGACTTCGAGAGTGATGGTCTTACCCGT 21959991 Query 45313 CAGAGTCTTCACAAAGATTTGCATG 45337 || || ||||| ||||| |||||| Sbjct 21959990 TAGGGTTTTCACGAAGATCTGCATG 21959966 >seq6 Length=29076228 Score = 98.7 bits (108), Expect = 8e-16 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192 ||| || ||| |||||||||||||||||| || || | | || || || || Sbjct 26766905 GTGAAGGGTGGACTCCTTCTGAATGTTGTAATCAGCGAGAGTCCTCCCATCTTCAAGCTG 26766964 Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252 || || ||||| ||||||| ||| ||||| ||||| | || ||||||||| |||||| Sbjct 26766965 CTTCCCAGCGAAGATCAACCTCTGCTGGTCCGGAGGGATGCCTTCCTTGTCCTGAATTTT 26767024 Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312 || || | | |||| | ||||||||||| ||| || ||||| || || Sbjct 26767025 AGCTTTCACATTATCGATCGTGTCGGAGCTCTCCACCTCCAAGGTGATGGTCTTTCCAGT 26767084 Query 45313 CAGAGTCTTCACAAAGATTTGCAT 45336 ||| ||||| ||||| |||||||| Sbjct 26767085 CAGGGTCTTAACAAAAATTTGCAT 26767108 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 45125 AATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCG 45184 || || | ||| || ||| ||||||||| |||||||| ||| || ||| |||| Sbjct 26767353 AACACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAATCGGCAAGGGTACGACCGTCC 26767412 Query 45185 TCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCC 45244 || ||||| || ||||| || || | | |||||||| || || | |||||||||||| Sbjct 26767413 TCTAGTTGCTTACCGGCAAAGATAAGTCTTTGTTGGTCTGGGGGAATTCCCTCCTTGTCC 26767472 Query 45245 GCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTC 45304 || || ||| || | | | |||| | ||| ||||| | ||| || ||| Sbjct 26767473 TGGATCTTAGCCTTGACGTTGTCAATGGTGTCAGAGCTCTCAACCTCTAGGGTGATGGTC 26767532 Query 45305 TTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || || |||| ||||| ||||| || ||||| Sbjct 26767533 TTTCCGGTCAACGTCTTGACAAAAATCTGCAT 26767564 >seq1 Length=29149675 Score = 98.7 bits (108), Expect = 8e-16 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192 ||| || ||| |||||| ||||||||||| || ||| | | || ||||| || Sbjct 6810874 GTGAAGGGTGGACTCCTTTTGAATGTTGTAATCCGCCAGAGTCCTTCCATCCTCCAGCTG 6810933 Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252 |||||||| || ||||||| ||| ||||| || || | || ||||||||| ||| || Sbjct 6810934 CTTTCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTCCTGAATCTT 6810993 Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312 ||| || | | |||| | ||| ||||||| |||||| ||||| || || Sbjct 6810994 GGCCTTCACGTTGTCAATTGTGTCTGAAGACTCAACCTCCAAGGTAATGGTCTTTCCGGT 6811053 Query 45313 CAGAGTCTTCACAAAGATTTGCAT 45336 ||||| || ||||| |||||||| Sbjct 6811054 GAGAGTTTTGACAAAAATTTGCAT 6811077 Score = 95.1 bits (104), Expect = 1e-14 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204 ||||||||||||||| || || || | | || ||||| || |||||||| || Sbjct 6810658 CTCCTTCTGAATGTTATAATCAGCAAGGGTCCTTCCATCTTCCAGCTGCTTTCCGGCAAA 6810717 Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGC 45264 ||||| | ||| ||||| || || | |||||||||||| ||||||| || || Sbjct 6810718 GATCAATCTCTGCTGGTCTGGTGGAATTCCCTCCTTGTCCTGAATTTTTGCTTTCACATT 6810777 Query 45265 CGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCAC 45324 | | | || || ||||||||||| || || ||||| ||||||| |||||||| Sbjct 6810778 GTCGATTGTATCAGAACTCTCCACCTCCAAAGTGATGGTCTTTCCCGTCAAGGTCTTCAC 6810837 Query 45325 AAAGATTTGCAT 45336 ||||| ||||| Sbjct 6810838 GAAGATCTGCAT 6810849 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/194 (71%), Gaps = 6/194 (3%) Strand=Plus/Plus Query 45146 TCCTTCTGAATGTTGTAGTCGTTCA---GTTGGCGATCGTCGTCCAGTTGTTTTCCGGCG 45202 || ||||| ||||||||||| | || ||| || | || || ||||| || |||||| Sbjct 6811702 TCTTTCTGGATGTTGTAGTC-TGCAAGAGTT--CGGCCATCCTCAAGTTGCTTGCCGGCG 6811758 Query 45203 AATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACC 45262 || ||||| || || || || || || | || ||||| ||| ||||| |||||| Sbjct 6811759 AAGATCAATCGTTGCTGATCCGGTGGAATCCCTTCCTTATCCTGGATTTTAGCCTTAACG 6811818 Query 45263 GCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTC 45322 | | | |||| | ||||||||| | ||| || ||||| || || || ||||| Sbjct 6811819 TTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATGGTCTTTCCTGTGAGGGTCTTA 6811878 Query 45323 ACAAAGATTTGCAT 45336 || ||||||||||| Sbjct 6811879 ACGAAGATTTGCAT 6811892 >seq2 Length=23174626 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 45122 CTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCG 45181 ||||| || | || ||||| |||||||| |||||||||||| ||| ||| | Sbjct 15735220 CTTAAGACAAGATGGAGCGTAGATTCCTTCTGGATGTTGTAGTCGGCAAGTGTTCGACCA 15735279 Query 45182 TCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTG 45241 || ||||| || || |||||||| || | ||||| ||||| || || | || |||||| Sbjct 15735280 TCCTCCAGCTGCTTACCGGCGAAGATGAGACGCTGCTGGTCAGGCGGTATTCCTTCCTTG 15735339 Query 45242 TCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATC 45301 ||| ||| ||| ||| || | | | | || || ||| ||||| | || || Sbjct 15735340 TCCTGAATCTTTGCCTTGACATTATCGATGGTATCAGAACTCTCGACCTCGAGAGTTATG 15735399 Query 45302 GTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 ||||| || || || || ||||| ||||| ||||| Sbjct 15735400 GTCTTCCCGGTAAGCGTTTTCACGAAGATCTGCAT 15735434 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395074285153990