Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20sativus_20[refseq_20GCF_5F000004075.2_202014-10-27] 190 sequences; 195,669,205 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq1 87.8 1e-12 >seq1 Length=29149675 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 |||||||| || | ||| || | |||||| || || || |||||||||||||| || || Sbjct 6810850 TCCTCCCCTCAGACGAAGAACAAGGTGAAGGGTGGACTCCTTTTGAATGTTGTAATCCGC 6810909 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 || || | | ||| |||| || || || ||| |||| | || || || || ||| Sbjct 6810910 CAGAGTCCTTCCATCCTCCAGCTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCTGGGGG 6810969 Query 18218 CACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | ||||||||| || ||| | ||| || | ||| ||||| | ||| Sbjct 6810970 AATGCCTTCCTTGTCCTGAATCTTGGCCTTCACGTTGTCAATTGTGTCTGAAGACTCAAC 6811029 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || | ||| ||| | || ||||| | ||||| |||||||||||||| Sbjct 6811030 CTCCAAGGTAATGGTCTTTCCGGTGAGAGTTTTGACAAAAATTTGCAT 6811077 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 18123 TGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGT 18182 ||||| || ||||| || || |||||||| ||||| | |||| | ||||||||| || Sbjct 6811234 TGAAGAGTGGATTCCTTCTGGATGTTGTAATCGGCAAGTGTTCGTCCATCTTCCAACTGC 6811293 Query 18183 TTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGT 18242 || || || |||| |||||||| || || ||| | ||||||||||| || | Sbjct 6811294 TTTCCGGCGAAGATCAGTCTTTGCTGGTCTGGGGGAATACCTTCCTTATCCTGGATCTTG 6811353 Query 18243 TGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTC 18302 |||||| | ||| || || || ||| || | |||||| | || ||||| Sbjct 6811354 GCCTTGACGTTATCAATGGTATCGGAGGACTCCACCTCGAGGGTGATAGTCTTTCCGGTA 6811413 Query 18303 AATGTTTTTACAAAAATTTGCAT 18325 | || || ||||| |||||||| Sbjct 6811414 AGAGTCTTGACAAAGATTTGCAT 6811436 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379343121581550