Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20sativus_20[refseq_20GCF_5F000004075.2_202014-10-27] 190 sequences; 195,669,205 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq3 156 4e-33 seq6 107 2e-18 seq1 104 2e-17 seq5 87.8 2e-12 seq2 82.4 7e-11 >seq3 Length=39782674 Score = 156 bits (172), Expect = 4e-33 Identities = 567/881 (64%), Gaps = 25/881 (3%) Strand=Plus/Plus Query 57545 CATGTTTCCGATTGAATATCCAGACATTTGGAACATGTACAAAAAGGCAGAAGCATCGTT 57604 |||||| || ||| ||||||| | || ||| | |||||||| ||||| ||||| || || Sbjct 22912836 CATGTTCCCCATTCAATATCCCCAAATCTGGGAGATGTACAAGAAGGCCGAAGCCTCCTT 22912895 Query 57605 TTGGACCGTCGAAGAAGTAGACCTGTCTAAGGATCTGAGCGATTGGGATTCCCTCAAAGA 57664 ||||||| |||||| || || || ||| | || || ||||||||||| | | Sbjct 22912896 CTGGACCGCCGAAGAGGTCGATCTCTCTCAAGACACTCGCCATTGGGATTCCTT---AAC 22912952 Query 57665 ATCTGA-GAGAA--ATTTTATTAAACACGTGTTGGCGTTTTTCGCCGCATCCGATGGTAT 57721 || || ||||| |||| || | ||||| | || || ||||| || || |||||||| Sbjct 22912953 TTCCGACGAGAAGCATTTCATCACTCACGTCCTTGCCTTCTTCGCTGCCTCTGATGGTAT 22913012 Query 57722 TGTTAACGAGAATTTGGTCGAAAGATTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATG 57781 || ||||| | | || | || | ||||| ||||| | || | ||| Sbjct 22913013 CGTCTTGGAGAACCTTGCCGGTCGGTTCATGAAGGAAGTTCAAGTCGCTGAAGTCAGAGC 22913072 Query 57782 CTTTTACGGATTTCAAGTGGCCATTGAAAACGTGCATTCAGAAATGTATTCGCTACTCAT 57841 ||| ||||| || ||| | || || || ||| | ||||| || |||||| || ||| | Sbjct 22913073 CTTCTACGGTTTCCAAATTGCTATCGAGAACATTCATTCCGAGATGTATAGTCTTCTCCT 22913132 Query 57842 CGATACGTACGTGAAGGACAACGACGAGAAACGTAGACTGTTCAACGCGATCGAAACAAT 57901 ||| || ||| | || || | ||||| | | |||| | || || || || | Sbjct 22913133 CGAAACTTACATCAAAGATTCGAATGAGAAGAATCGCTTGTTTCATGCTATTGATACTGT 22913192 Query 57902 GCCCGCGATCGCCAAGAAGGCAGAGTGGTCAATCAAATGGATAAAAAGCGCCACGGCCAC 57961 ||| || |||||||| || ||| | | || ||||| | || ||||| | Sbjct 22913193 CCCCTGTGTCAAGAAGAAGGCCGATTGGGCGTTGAAGTGGATTGACAG---CACGGAGTC 22913249 Query 57962 GTTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTT 58021 || || ||| || | | || || || || || || || ||||| || || || || Sbjct 22913250 ATTTGCTGAGCGGATTTTGGCATTTGCTTGTGTTGAGGGAATTTTCTTCTCAGGTAGTTT 22913309 Query 58022 TGCGGCAATATTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGA 58081 | || || ||| |||| ||||| || | ||||| || || || || ||||| Sbjct 22913310 CTGTTCTATTTTCTGGTTGAAAAAACGTGGGTTAATGCCTGGACTAACATTCTCAAACGA 22913369 Query 58082 GTTGATATCGCGCGACGAGGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTCACAT 58141 |||||| || | || || ||||| ||| ||||||||| || | |||| | | | Sbjct 22913370 GTTGATTTCAAGAGATGAAGGTCTTCATTGTGATTTTGCATGTTTGTTGTATT----CGT 22913425 Query 58142 TGT----CAATAAACCGACGCGGGATCGCATCTTGGACATTATCACCGAGGCGGTCGCGA 58197 ||| || ||| || |||||| | ||| ||| | | ||||| || | Sbjct 22913426 TGTTGAGGAAGAAATTGAATGTGGATCGAGTGAAGGAGATTGTTATGGAGGCTGTGAATA 22913485 Query 58198 TCGAAAATGAGTTTGTCACCGAAGCCCTACCGGTGGCCATGCTCGGTATGAACAATGATT 58257 | || | || || || || || | |||||||| | | || ||||| || Sbjct 22913486 TAGAGAGGGAATTCGTTTGTGATGCTTTGCCGGTGGCTCTAGTTGGAATGAATGGAGACC 22913545 Query 58258 TGATGTCAAAGTACATTGAGTTTGTTGCCGACAGACTTTTGCTCGAACTGATTGGAGAGC 58317 | ||| | |||||||| ||||| || || ||| || | | || | ||||| | Sbjct 22913546 TTATGAGCCAATACATTGAATTTGTGGCAGATAGA--TTGGTTGGAGC--ATTGGGGTAT 22913601 Query 58318 GTCA----TTACAACACGAAAAATCCGTTTGATTTTATGAATCTGATCTCGCTCGAGGGC 58373 | || ||||| | ||||||| ||||||| ||| | |||| || | | || Sbjct 22913602 GACAAAATCTACAATGTGCAAAATCCATTTGATTGGATGGAGTTGATTTCCTTGCAAGGG 22913661 Query 58374 AAGACAAACTTTTTCGaaaaaaaaGTTAGCGAATATCAAAA 58414 ||||| || || || || |||| |||| | ||||||||||| Sbjct 22913662 AAGACTAATTTCTTTGAGAAAAGAGTTGGGGAATATCAAAA 22913702 Score = 87.8 bits (96), Expect = 2e-12 Identities = 159/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| || || ||||| ||||||| || || ||||| | || ||||| || Sbjct 4360802 ATGCAAATATTTGTGAAGACCTTGACAGGAAAGACCATCACATTGGAGGTTGAGAGCTCA 4360743 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | || || | ||| ||||||||| || | || || |||||| Sbjct 4360742 GACACCATTGATAACGTTAAGGCTAAAATCCAGGACAAGGAGGGTATCCCTCCTGACCAG 4360683 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTATAA 31371 || | ||||| |||||||| || || ||||| || | | | || || |||||| || Sbjct 4360682 CAAAGACTAATTTTCGCTGGAAAGCAATTGGAGGA-TGGACGTACACTGGCCGATTACAA 4360624 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||||||||| || || || || || || || ||| | || | || |||| Sbjct 4360623 CATTCAAAAGGAGTCCACCCTCCACCTTGTCCTTCGTCTTCGTGGTGGTA 4360574 >seq6 Length=29076228 Score = 107 bits (118), Expect = 2e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||||||||| || ||||| ||||| || || || |||||| | || || || ||| Sbjct 26767108 ATGCAAATTTTTGTTAAGACCCTGACTGGAAAGACCATCACCTTGGAGGTGGAGAGCTCC 26767049 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | || ||| | ||| ||||||||||||| | || || |||||| Sbjct 26767048 GACACGATCGATAATGTGAAAGCTAAAATTCAGGACAAGGAAGGCATCCCTCCGGACCAG 26766989 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | | || |||||||| || ||| | ||||| | |||| | ||||| ||| Sbjct 26766988 CAGAGGTTGATCTTCGCTGGGAAGCAGCTTGAAGATGGGAGGACTCTCGCTGATTACAAC 26766929 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||||| || || || || ||||| || || || Sbjct 26766928 ATTCAGAAGGAGTCCACCCTTCACCTTGTCCT 26766897 >seq1 Length=29149675 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||||||||| || || ||||| || || || || || ||| | || ||||| | || Sbjct 6811077 ATGCAAATTTTTGTCAAAACTCTCACCGGAAAGACCATTACCTTGGAGGTTGAGTCTTCA 6811018 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | || || | || ||||||||||||| | || || |||||| Sbjct 6811017 GACACAATTGACAACGTGAAGGCCAAGATTCAGGACAAGGAAGGCATTCCCCCAGACCAG 6810958 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | | || || || || || ||| |||| || | |||| || ||||| ||| Sbjct 6810957 CAGAGGTTGATCTTTGCCGGAAAGCAGCTGGAGGATGGAAGGACTCTGGCGGATTACAAC 6810898 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 |||||||| || || || ||||| || || ||| | |||||||| || Sbjct 6810897 ATTCAAAAGGAGTCCACCCTTCACCTTGTTCTTCGTCTGAGGGGAGG 6810851 Score = 100 bits (110), Expect = 3e-16 Identities = 152/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 ||||||||| || || |||||||| || || || || |||||| |||| || || | || Sbjct 6811437 CATGCAAATCTTTGTCAAGACTCTTACCGGAAAGACTATCACCCTCGAGGTGGAGTCCTC 6811378 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 ||| | | || | ||||| | || ||| |||||||| | || || ||||| Sbjct 6811377 CGATACCATTGATAACGTCAAGGCCAAGATCCAGGATAAGGAAGGTATTCCCCCAGACCA 6811318 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTATA 31370 ||| | || || ||||| || || ||||||||||| | | | || | |||||| | Sbjct 6811317 GCAAAGACTGATCTTCGCCGGAAAGCAGTTGGAAGA-TGGACGAACACTTGCCGATTACA 6811259 Query 31371 ACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 |||| || || ||||| ||||||||||| || || Sbjct 6811258 ACATCCAGAAGGAATCCACTCTTCATCTTGTCCT 6811225 >seq5 Length=28023477 Score = 87.8 bits (96), Expect = 2e-12 Identities = 171/248 (69%), Gaps = 10/248 (4%) Strand=Plus/Plus Query 31187 TCAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAA 31246 |||| |||||| || ||||| || || || || || || || ||||| |||| || || Sbjct 21959961 TCAACCATGCAGATCTTCGTGAAAACCCTAACGGGTAAGACCATCACTCTCGAAGTCGAG 21960020 Query 31247 CCGTCCGACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCC 31305 ||||| | |||| | ||||| || ||| | |||||||||||| | || || Sbjct 21960021 AGCTCCGATACCATCGACAATGTCAAGGCAAAGA-TCCAGGACAAGGAAGGAATCCCTCC 21960079 Query 31306 CGACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGAC--TCTATGACTATGAGC 31363 |||||||||||| | || ||||| || || ||| | || ||| | | |||| | Sbjct 21960080 GGACCAGCAGCGTTTGATTTTCGCCGGAAAGCAGCTTGAGGACGGCCGAACACTA--GCC 21960137 Query 31364 GATTATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT--- 31420 || || |||||||| || ||||| || || || || || || | || || || ||| Sbjct 21960138 GACTACAACATTCAGAAGGAATCCACGCTCCACCTTGTGCTCCGTCTCAGAGGAGGTGCC 21960197 Query 31421 -AGAAGCG 31427 ||||||| Sbjct 21960198 AAGAAGCG 21960205 >seq2 Length=23174626 Score = 82.4 bits (90), Expect = 7e-11 Identities = 153/217 (71%), Gaps = 7/217 (3%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| || || || || || || || || || |||| || || || Sbjct 15735434 ATGCAGATCTTCGTGAAAACGCTTACCGGGAAGACCATAACTCTCGAGGTCGAGAGTTCT 15735375 Query 31253 GACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 || | |||| | ||||| || ||| | |||||||||||| | ||||| ||||| Sbjct 15735374 GATACCATCGATAATGTCAAGGCAAAGATTCA-GGACAAGGAAGGAATACCGCCTGACCA 15735316 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA--CTCTATGACTATGAGCGATTAT 31369 ||||||||| || ||||| || || ||| |||| || || | ||| || ||| || Sbjct 15735315 GCAGCGTCTCATCTTCGCCGGTAAGCAGCTGGAGGATGGTCGAACACT-TG-CCGACTAC 15735258 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACTTA 31406 ||||| || || ||||| || || ||||| || |||| Sbjct 15735257 AACATCCAGAAGGAATCTACGCTCCATCTTGT-CTTA 15735222 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445765341304800