Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20sativus_20[refseq_20GCF_5F000004075.2_202014-10-27] 190 sequences; 195,669,205 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq3 163 3e-35 seq6 91.5 1e-13 >seq3 Length=39782674 Score = 163 bits (180), Expect = 3e-35 Identities = 426/640 (67%), Gaps = 20/640 (3%) Strand=Plus/Minus Query 11338 CTTTTGATATTCACTAACTCGTCGTTCGAAAAAATTAGTCTTACCTTCTAGTGATATATA 11397 |||||||||||| | ||||| | || || ||||||||||| |||| | || || | Sbjct 22913703 CTTTTGATATTCCCCAACTCTTTTCTCAAAGAAATTAGTCTTCCCTTGCAAGGAAATCAA 22913644 Query 11398 CTCCATAAAGCTAAAAGGATTATATACATTGAAGACTTTTTCACAACCTAACTCTGTTAA 11457 |||||| | ||| ||||| | |||||| ||| ||| ||| | || || || | Sbjct 22913643 CTCCATCCAATCAAATGGATTTTGCACATTGTAGATTTTGTCATACCCCAATGCTCCAAC 22913584 Query 11458 TAATCTATCTGCGACGAATTCTATATACTGAGACATTAAACAACAATTCATACCTATAAG 11517 ||||||||||| || ||||| || || || ||| | | |||||| || | || Sbjct 22913583 CAATCTATCTGCCACAAATTCAATGTATTGGCTCATAAGGTCTCCATTCATTCCAACTAG 22913524 Query 11518 ATCCACCGGAATAGCAACTGTCAAA--AACTCCTTTTCTATATTAACCGCATCAATGATT 11575 | ||||||| | |||| | |||| || ||| | |||||||| || || || || | Sbjct 22913523 AGCCACCGGCAAAGCATCA--CAAACGAATTCCCTCTCTATATTCACAGCCTCCATAACA 22913466 Query 11576 ATCGACGTTATAACTTCC---TTAGATGGTGGATGTAATAAATGTTTAAACATTAAACAC 11632 ||| | | | ||| || || | | | || | || || ||||| Sbjct 22913465 ATCTCCTTCACTCGATCCACATTCAATT-TCTTCCTCAACAACGAATA--CAACAAACAT 22913409 Query 11633 GCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCG 11692 |||||||||||||| | |||||| ||||| || | || || || ||||||| ||| Sbjct 22913408 GCAAAATCACAATGAAGACCTTCATCTCTTGAAATCAACTCGTTTGAGAATGTTAGTCCA 22913349 Query 11693 GGCATCAATCCTCGtttttttATCC--AAAATATAGCAGCAAATGAACCAGAAAAGAATA 11750 ||||| || || |||||||| | || |||||| | ||| || | ||| || ||||| | Sbjct 22913348 GGCATTAACCCACGTTTTTTCAACCAGAAAATAGAACAGAAACT--ACCTGAGAAGAAAA 22913291 Query 11751 TTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCATATACCTTGTTGCTAGATATCC 11810 ||||||| ||| |||||||| | | | || || || || |||| |||| Sbjct 22913290 TTCCCTCAACACAAGCAAATGCCAAAATCCGCTCAGCAAATGACTCCGTGCTGTCAATCC 22913231 Query 11811 ATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAGCGTTAAATA 11870 | || |||||||| || ||||| || || || | || || ||||| | ||| | Sbjct 22913230 ACTTCAACGCCCAATCGGCCTTCTTCTTGACACAGGGGACAGTATCAATAGCATGAAACA 22913171 Query 11871 AATGCATTTTTTCTATATT---ATCTCTTACATATGTATCTATTAATAAACTATACATTT 11927 | || || |||| ||| |||| | | || || || | | | ||||||||| | Sbjct 22913170 A--GCGATTCTTCT-CATTCGAATCTTTGATGTAAGTTTCGAGGAGAAGACTATACATCT 22913114 Query 11928 CTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAA 11967 | |||||||| || || ||||| ||||| || || ||||| Sbjct 22913113 CGGAATGAATGTTCTCGATAGCAATTTGGAAACCGTAGAA 22913074 >seq6 Length=29076228 Score = 91.5 bits (100), Expect = 1e-13 Identities = 144/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 38173 CCTCCCTGATTAATATATCTAACTGTGTTATTATATATTCTTAACATAGGTACTATACCA 38232 ||||| |||| || ||||| | | || | ||| ||| | | |||||| | |||||| Sbjct 22590411 CCTCCTTGATCAACATATCGAGCAGTATCATTGAATACCCGCAGCATAGGCAAAATACCA 22590352 Query 38233 TTAGATTTGCCGTTTATACCGGATATATAAGTACCCTTAGCTCGTATATTACTTATCGAC 38292 |||||| | || ||| | || |||||| ||||| | || || ||||| || || Sbjct 22590351 TTAGATGTCCCATTTGTTCCACGAATATAACTACCCATGGCACGAATATTGTGGATGGAA 22590292 Query 38293 AATCCTATTCCACCTGCATGTTTTGATATTAA-AGCGCATTGTTTTAACGTATCAAATAT 38351 | || || ||||| || | ||| | ||| ||| || | |||||| |||||| |||| Sbjct 22590291 ACACCAATACCACCAGCC-GACTTGCTGATAACAGCACACTCTTTTAAGGTATCATATAT 22590233 Query 38352 ACCTTCTATACTGTCATCCTTTAT 38375 ||||||||||| || ||||| || Sbjct 22590232 TCCTTCTATACTATCCTCCTTCAT 22590209 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468523687253600