Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20sativus_20[refseq_20GCF_5F000004075.2_202014-10-27] 190 sequences; 195,669,205 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq3 228 1e-54 seq6 104 3e-17 >seq3 Length=39782674 Score = 228 bits (252), Expect = 1e-54 Identities = 576/870 (66%), Gaps = 8/870 (1%) Strand=Plus/Minus Query 35867 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTT 35926 ||||| ||||| || || | ||| || || |||||||| || |||| || || || Sbjct 22913702 TTTTGATATTCCCCAACTCTTTTCTCAAAGAAATTAGTCTTCCCTTGCAAGGAAATCAAC 22913643 Query 35927 TCCATGAAATCGAATGGATTGATAACATTATAAAtttttttAAATCCCAATTCAGAAATC 35986 ||||| |||| |||||||| ||||| || ||||| | | | |||||| | || | Sbjct 22913642 TCCATCCAATCAAATGGATTTTGCACATTGTAGATTTTGTCATACCCCAATGCTCCAACC 22913583 Query 35987 AATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGT 36046 ||||||||||| |||||||| || ||| |||| | || | ||||||||| | || Sbjct 22913582 AATCTATCTGCCACAAATTCAATGTATTGGCTCATAAGGTCTCCATTCATTCCAACTAGA 22913523 Query 36047 TTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATA 36106 || || | ||| || || ||||| || ||| || || || | | ||| Sbjct 22913522 GCCACCGGCAAAGCATCACAAACGAATTCCCTCTCTATATTCACAGCCTCCATAACAATC 22913463 Query 36107 GATATTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACATGCGAAA 36166 | ||| || || || | | | || | ||| ||||||||| ||| Sbjct 22913462 TCCTTCACTCGATCCACATTCAATTTCTTCCTCAACAACGAATACAACAAACATGCAAAA 22913403 Query 36167 TCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATT 36226 || || || ||||| || ||||| ||| || ||||| || || || ||||| |||||| Sbjct 22913402 TCACAATGAAGACCTTCATCTCTTGAAATCAACTCGTTTGAGAATGTTAGTCCAGGCATT 22913343 Query 36227 AGGCCACGCTTTTTAAGCCAAAATATGGA-CGCAAATGATCCAGAAAAGAAAATTCCTTC 36285 | ||||| ||||| | ||| || || || | ||| | || || ||||||||||| || Sbjct 22913342 AACCCACGTTTTTTCAACCAGAAAATAGAACAGAAACTA-CCTGAGAAGAAAATTCCCTC 22913284 Query 36286 TACTGCCGCAAAGGCAATAAGTCTCTCTCCATA--AC-CGGCACTGTCATGTATCCACTT 36342 || ||||| || | || | ||| || | || | | |||||| |||||||| Sbjct 22913283 AACACAAGCAAATGCCAAAATCCGCTCAGCAAATGACTCCGTGCTGTCA---ATCCACTT 22913227 Query 36343 TTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATA 36402 ||||||||||||||||| || ||||| || | || || ||||||| ||| | Sbjct 22913226 CAACGCCCAATCGGCCTTCTTCTTGACACAGGGGACAGTATCAATAGCATGAAACAAGCG 22913167 Query 36403 GtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATG 36462 || || ||||| |||||| | || || || | | |||||||||||| || ||||| Sbjct 22913166 ATTCTTCTCATTCGAATCTTTGATGTAAGTTTCGAGGAGAAGACTATACATCTCGGAATG 22913107 Query 36463 AATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTC 36522 |||||| || || || ||||| || |||||||| ||| | || | | || ||||| Sbjct 22913106 AATGTTCTCGATAGCAATTTGGAAACCGTAGAAGGCTCTGACTTCAGCGACTTGAACTTC 22913047 Query 36523 TGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGC 36582 | || || | || | || || || || || ||| ||| || || || || Sbjct 22913046 CTTCATGAACCGACCGGCAAGGTTCTCCAAGACGATACCATCAGAGGCAGCGAAGAAGGC 22912987 Query 36583 CAATACATGTTTTATAAAATATTTTTCGTTTGGTGTTAGTTTATTCCAATCATTGATATC 36642 | || || | || |||| || |||| | |||| || ||||| | || Sbjct 22912986 AAGGACGTGAGTGATGAAATGCTTCTCGTCGGAAGTTAAGGAATCCCAATGGCGAGTGTC 22912927 Query 36643 TTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATT 36702 || ||| | ||| || ||||| | ||||| || || || || ||||| || ||||| | Sbjct 22912926 TTGAGAGAGATCGACCTCTTCGGCGGTCCAGAAGGAGGCTTCGGCCTTCTTGTACATCTC 22912867 Query 36703 CCAGATGTCATGATATTGAATTGGAAAAAT 36732 |||||| | |||||||||| || || || Sbjct 22912866 CCAGATTTGGGGATATTGAATGGGGAACAT 22912837 >seq6 Length=29076228 Score = 104 bits (114), Expect = 3e-17 Identities = 156/222 (70%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 66215 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 66274 |||||| ||||| | |||| ||| || | ||| | || | || ||| || | |||||| Sbjct 22590412 TCCTCCTTGATCAACATATCGAGCAGTATCATTGAATACCCGCAGCATAGGCAAAATACC 22590353 Query 66275 ATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAATATTACTAATTGA 66334 ||| ||||| ||||| || || ||||| || || | ||||||||||| || || Sbjct 22590352 ATTAGATGTCCCATTTGTTCCACGAATATAACTACCCATGGCACGAATATTGTGGATGGA 22590293 Query 66335 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 66394 | ||| || || || ||| || ||| | || || |||||| |||||||| || Sbjct 22590292 AACACCAATACCACCAGCCGACTTGCTGATAACAGCACACTCTTTTAAGGTATCATATAT 22590233 Query 66395 GCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCT 66436 || ||||||||||| ||| ||||| | || |||||||| Sbjct 22590232 TCCTTCTATACTATCCTCCTTCATGCATATAAGGAAACAGCT 22590191 Score = 84.2 bits (92), Expect = 3e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 66456 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 66515 ||||| | ||||| | |||||||||||| || |||||||| || || | | | Sbjct 22590056 GTTCCAGAGTTAAAAAGGGTAGGAGAAGCATGAGTAAACCAACGTTGTGACATTGTGTGA 22589997 Query 66516 TACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 66575 || || | |||||| || || ||||| || ||||| || || || || | ||| ||| Sbjct 22589996 TAAGTTTTAATAGCAGAATCAATATCATCTTTGTGAATACCAACGGCAACCCTCATCAAC 22589937 Query 66576 ATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAA 66635 ||||| || || || || || | ||| | | |||||| | ||| || |||||| | Sbjct 22589936 ATGTGTTGGGGCCTCTCCACAACCTTCCCCTGAACTTTCAAGAGGTATGACCTTTCCAGA 22589877 Query 66636 GTTTTAAAACCAAA 66649 ||||| || ||||| Sbjct 22589876 GTTTTGAAGCCAAA 22589863 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658171236839600