Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20sativus_20[refseq_20GCF_5F000004075.2_202014-10-27] 190 sequences; 195,669,205 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq1 93.3 4e-14 seq6 91.5 1e-13 seq3 89.7 5e-13 >seq1 Length=29149675 Score = 93.3 bits (102), Expect = 4e-14 Identities = 153/218 (70%), Gaps = 2/218 (1%) Strand=Plus/Plus Query 139549 ACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGA 139608 ||| | ||| | ||||| || ||||| ||||||||||| ||||| || || || Sbjct 6810862 ACGAAGAACAAGGTGAAGGGTGGACTCCTTTTGAATGTTGTAATCCGCCAGAGTCCTTCC 6810921 Query 139609 GTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTT 139668 || || ||||| || || ||| |||||| | ||||| || || || |||||||| || Sbjct 6810922 ATCCTCCAGCTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGAATGCCTTCCTT 6810981 Query 139669 GTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCA 139727 ||| ||| | || | || | | || | |||||| | | ||| ||||| | ||| | Sbjct 6810982 GTC-CTGAATCTTGGCCTTCACGTTGTCAATTGTGTCTGAAGACTCAACCTCCAAGGTAA 6811040 Query 139728 CCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 ||||| ||||| | ||||| || || ||||||||| Sbjct 6811041 TGGTCTTTCCGGTGAGAGTTTTGACAAAAATTTGCATA 6811078 Score = 86.0 bits (94), Expect = 6e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| || || | ||| | || | ||||| || ||||| || |||||||||||||| Sbjct 6810622 GCCACCACGGAGACGAAGGACGAGGTGAAGGGTCGACTCCTTCTGAATGTTATAATCAGC 6810681 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | || || ||||| ||||| || || ||| |||||| | ||||| || || || Sbjct 6810682 AAGGGTCCTTCCATCTTCCAGCTGCTTTCCGGCAAAGATCAATCTCTGCTGGTCTGGTGG 6810741 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCA 139715 || || || ||||| ||| |||||| ||| | | || | ||| || | ||||| Sbjct 6810742 AATTCCCTCCTTGTC-CTGAATTTTTGCTTTCACATTGTCGATTGTATCAGAACTCTCCA 6810800 Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||| | || | ||||| || ||||| || || ||||| || ||||| Sbjct 6810801 CCTCCAAAGTGATGGTCTTTCCCGTCAAGGTCTTCACGAAGATCTGCAT 6810849 >seq6 Length=29076228 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| || || | ||| | || | ||| | || ||||| || || ||||| || ||| Sbjct 26768021 GCCACCACGAAGACGGAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGC 26768080 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 || || | || ||||| ||||| ||||| |||| |||||||||||||| || || Sbjct 26768081 CAAGGTACGGCCATCCTCGAGTTGTTTTCCAGCGAAGATGAGACGTTGCTGATCCGGGGG 26768140 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || ||||| ||||| ||| || || | | || | || || | | ||| || Sbjct 26768141 AATTCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATCGTATCAGACGACTCAAC 26768200 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||| ||| | ||||| ||||| | ||||| ||||| |||||||| Sbjct 26768201 CTCAAGGGTGATTGTCTTACCGGTTAGGGTTTTAACGAAGATTTGCAT 26768248 >seq3 Length=39782674 Score = 89.7 bits (98), Expect = 5e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 ||||| || || || || || |||||| | || | ||| || || || |||||| Sbjct 19995608 GTAGATTCCTTCTGGATATTGTAATCGGCAAGCGTTCGGCCGTCCTCAAGTTGCTTACCA 19995549 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGT-TT 139686 ||| |||| || | || || ||||| || ||||| ||||| || ||| |||||| || Sbjct 19995548 GCAAAGATAAGCCTCTGTTGGTCGGGTGGAATGCCCTCTTTATCT-TGAATTTTTGCCTT 19995490 Query 139687 TAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGT 139746 || | || | ||| || | | |||||||| | ||| | || ||||| || | || Sbjct 19995489 TACATTGTCAATTGTATCAGAGCTTTCCACCTCGAGGGTGATTGTTTTGCCAGTGAGAGT 19995430 Query 139747 TTTTACGAATATTTGCAT 139764 |||||||||||||||||| Sbjct 19995429 TTTTACGAATATTTGCAT 19995412 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || || || | ||||| || | ||| || || ||||||||||||||||| | Sbjct 19996094 CCACCGCGCAATCGGAGCACTAAATGCAACGTTGATTCCTTTTGAATGTTATAATCTGCC 19996035 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || || ||||| ||||| ||||||||| | |||| | || || || || || Sbjct 19996034 AGAGTCCTGCCATCTTCAAGCTGCTTACCAGCAAAAATCAACCTCTGTTGGTCCGGTGGA 19995975 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || || || || || ||| || ||| | | || | ||| || | | |||||| Sbjct 19995974 ATACCCTCCTTATCTTGGATCTTAGCTTTCACATTATCAATTGTATCAGAGCTCTCCACT 19995915 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || | ||| | || || ||||| || ||||| || || ||||||||| Sbjct 19995914 TCCAAGGTAATTGTTTTCCCGGTTAAGGTTTTCACAAAAATTTGCATA 19995867 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496062821848000