Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20sativus_20[refseq_20GCF_5F000004075.2_202014-10-27] 190 sequences; 195,669,205 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq3 230 3e-55 seq6 98.7 1e-15 >seq3 Length=39782674 Score = 230 bits (254), Expect = 3e-55 Identities = 584/883 (66%), Gaps = 34/883 (4%) Strand=Plus/Minus Query 49669 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTT 49728 ||||| ||||| || || | ||| || || |||||||| || |||| ||| || || Sbjct 22913702 TTTTGATATTCCCCAACTCTTTTCTCAAAGAAATTAGTCTTCCCTTGCAAGGAAATCAAC 22913643 Query 49729 TCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATC 49788 ||||| ||||||| ||||| ||||| || ||||| | | | |||||| | || | Sbjct 22913642 TCCATCCAATCAAATGGATTTTGCACATTGTAGATTTTGTCATACCCCAATGCTCCAACC 22913583 Query 49789 AATCTATCCGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGT 49848 |||||||| || |||||||| || ||| |||| | || | ||||||||| | || Sbjct 22913582 AATCTATCTGCCACAAATTCAATGTATTGGCTCATAAGGTCTCCATTCATTCCAACTAGA 22913523 Query 49849 TTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATAATA 49908 || || | ||| || || ||||| || || || || || |||| | Sbjct 22913522 GCCACCGGCAAAGCATCACAAACGAATTCCCTCTCTATATTCACAGCCTCC---ATAACA 22913466 Query 49909 GATCTAACGGTTTCTTCACTCGGTGGATGCAATAAATGTTT-------------AAACAT 49955 |||| ||||||||| | | || | ||| | | | ||| Sbjct 22913465 -ATCTC-------CTTCACTCGATCCA--CATTCAATTTCTTCCTCAACAACGAATACAA 22913416 Query 49956 CAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGT 50015 ||||||||| ||||| || || ||||| || ||||| ||| | ||||| || || || Sbjct 22913415 CAAACATGCAAAATCACAATGAAGACCTTCATCTCTTGAAATCAACTCGTTTGAGAATGT 22913356 Query 50016 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGA-CGCAAATGACCCAGAAA 50074 ||||| ||||||| ||||| ||||| | ||| || || || | ||| ||| || | Sbjct 22913355 TAGTCCAGGCATTAACCCACGTTTTTTCAACCAGAAAATAGAACAGAAACTACCT-GAGA 22913297 Query 50075 AGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATA--ACTG-GCGCTGT 50131 |||| ||||| || || ||||| || | || | ||| || | ||| | ||||| Sbjct 22913296 AGAAAATTCCCTCAACACAAGCAAATGCCAAAATCCGCTCAGCAAATGACTCCGTGCTGT 22913237 Query 50132 CATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGG 50191 || |||||||| ||||||||||||||||| || ||||| || | || || || | Sbjct 22913236 CA---ATCCACTTCAACGCCCAATCGGCCTTCTTCTTGACACAGGGGACAGTATCAATAG 22913180 Query 50192 CATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTAT 50251 ||| ||| | || || ||||| |||||| | ||||| |||| | |||||||| Sbjct 22913179 CATGAAACAAGCGATTCTTCTCATTCGAATCTTTGATGTAAGTTTCGAGGAGAAGACTAT 22913120 Query 50252 ACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGG 50311 |||| || ||||||||||| || || || || || || |||||||| ||| | || | Sbjct 22913119 ACATCTCGGAATGAATGTTCTCGATAGCAATTTGGAAACCGTAGAAGGCTCTGACTTCAG 22913060 Query 50312 TAATCTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGG 50371 | || ||||| | || || | || | || || || || || ||| || Sbjct 22913059 CGACTTGAACTTCCTTCATGAACCGACCGGCAAGGTTCTCCAAGACGATACCATCAGAGG 22913000 Query 50372 CTGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTATTCC 50431 | || || || || | || || | || ||||| || |||| || |||| || || Sbjct 22912999 CAGCGAAGAAGGCAAGGACGTGAGTGATGAAATGCTTCTCGTCGGAAGTTAAGGAATCCC 22912940 Query 50432 AATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 50491 ||| | |||| ||| | ||| || ||||| | ||||| || || || || |||| Sbjct 22912939 AATGGCGAGTGTCTTGAGAGAGATCGACCTCTTCGGCGGTCCAGAAGGAGGCTTCGGCCT 22912880 Query 50492 TTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAAT 50534 | || ||||| | |||||| | ||||||| || ||||| || Sbjct 22912879 TCTTGTACATCTCCCAGATTTGGGGATATTGAATGGGGAACAT 22912837 >seq6 Length=29076228 Score = 98.7 bits (108), Expect = 1e-15 Identities = 155/222 (70%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 80094 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 80153 |||||| ||||| | |||| ||| || | ||| | || | || ||| || | |||||| Sbjct 22590412 TCCTCCTTGATCAACATATCGAGCAGTATCATTGAATACCCGCAGCATAGGCAAAATACC 22590353 Query 80154 ATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 80213 ||| ||||| ||||| || || ||||| || || ||||||||||||| || || Sbjct 22590352 ATTAGATGTCCCATTTGTTCCACGAATATAACTACCCATGGCACGAATATTGTGGATGGA 22590293 Query 80214 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 80273 | ||| || || || ||| || ||| | || || |||||| |||||||| || Sbjct 22590292 AACACCAATACCACCAGCCGACTTGCTGATAACAGCACACTCTTTTAAGGTATCATATAT 22590233 Query 80274 GCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCT 80315 || ||||| ||||| || ||||| | || |||||||| Sbjct 22590232 TCCTTCTATACTATCCTCCTTCATGCATATAAGGAAACAGCT 22590191 Score = 89.7 bits (98), Expect = 7e-13 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 80335 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTG 80394 ||||| | ||||| | |||||||||||| || |||||||| || |||| | | Sbjct 22590056 GTTCCAGAGTTAAAAAGGGTAGGAGAAGCATGAGTAAACCAACGTTGTGACATTGTGTGA 22589997 Query 80395 TACGTCTCAATAGCTGATTCTATATCCCATTGATGAATTCCTACCGCGACACGCATTAAC 80454 || || | |||||| || || ||||| || ||||| || || || || | ||| ||| Sbjct 22589996 TAAGTTTTAATAGCAGAATCAATATCATCTTTGTGAATACCAACGGCAACCCTCATCAAC 22589937 Query 80455 ATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCAAA 80514 ||||| || || || || || | ||| | | |||||| | ||| || |||||| | Sbjct 22589936 ATGTGTTGGGGCCTCTCCACAACCTTCCCCTGAACTTTCAAGAGGTATGACCTTTCCAGA 22589877 Query 80515 GTTTTAAAACCAAA 80528 ||||| || ||||| Sbjct 22589876 GTTTTGAAGCCAAA 22589863 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718267094111600