Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20sativus_20[refseq_20GCF_5F000004075.2_202014-10-27] 190 sequences; 195,669,205 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq3 150 2e-31 >seq3 Length=39782674 Score = 150 bits (166), Expect = 2e-31 Identities = 442/671 (66%), Gaps = 25/671 (4%) Strand=Plus/Minus Query 13581 TTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTT 13640 ||||||||||| | ||||||||| |||||||| ||||| || |||| || || || Sbjct 22913702 TTTTGATATTCCCCAACTCTTTTCTCAAAGAAATTAGTCTTCCCTTGCAAGGAAATCAAC 22913643 Query 13641 TCCATAAAATCAAATGGATTTATTGACATAA-ACACTTTATCACAACCTAGTTCTAATAG 13699 ||||| |||||||||||||| | |||| | | ||| ||| | || | | || | Sbjct 22913642 TCCATCCAATCAAATGGATTT-TGCACATTGTAGATTTTGTCATACCCCAATGCTCCAAC 22913584 Query 13700 TAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAG 13759 |||||||| || | ||| ||||| ||||| ||| | || | |||||| || | ||| Sbjct 22913583 CAATCTATCTGCCACAAATTCAATGTATTGGCTCATAAGGTCTCCATTCATTCCAACTAG 22913524 Query 13760 TTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCTTTTATAAT 13819 || || | || | ||||| | |||||| ||||||||| |||| Sbjct 22913523 AGCCACCGGCAAAGCATCACAAACGAATTCCCTCTCTATATTCACAGCCTCC---ATAAC 22913467 Query 13820 AATTGTAATAATCTCATTAGAAGGAGGATATTTTAG------ATGTTTAAAAATTAAACA 13873 ||| | | ||| | | || | || | | || || ||||| Sbjct 22913466 AATCTCCTTCA-CTCGATCCACATTCAATTTCTTCCTCAACAACGAATACAAC--AAACA 22913410 Query 13874 CGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCC 13933 ||||||||||||||||| || |||||||| ||| | |||||||| ||||||| ||| Sbjct 22913409 TGCAAAATCACAATGAAGACCTTCATCTCTTGAAATCAACTCGTTTGAGAATGTTAGTCC 22913350 Query 13934 TGGCATCAATCCTCGtttttttAACCAAAATATTG--CAGCAAATGACCCGGAAAAGAAT 13991 ||||| || || |||||||| ||||| || || | ||| || | || || ||||| Sbjct 22913349 AGGCATTAACCCACGTTTTTTCAACCAGAAAATAGAACAGAAACTA--CCTGAGAAGAAA 22913292 Query 13992 ATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGAT 14051 ||||||||||| |||||| || | | || || |||| || | | ||| Sbjct 22913291 ATTCCCTCAACACAAGCAAATGCCAAAATCCGCTCAGCAAATGACTCCGTGCTGT---CA 22913235 Query 14052 ATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTA 14111 ||||| || ||||| || | || || || | | | | || |||||||||| | Sbjct 22913234 ATCCACTTCAACGCCCAATCGGCCTTCTTCTTGACACAGGGGACAGTATCAATAGCATGA 22913175 Query 14112 AATAAATATTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATT 14171 || || | |||||| || | | | ||||| || || | || | |||||||| Sbjct 22913174 AACAAGCGATTCTTCTCATTCGAATCTTTGATGTAAGTTTCGAGGAGAAGACTATACATC 22913115 Query 14172 TCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTC--CGACC 14229 || || || ||||| || ||||| || || ||||| || ||| ||| |||| |||| Sbjct 22913114 TCGGAATGAATGTTCTCGATAGCAATTTGGAAACCGTAGAAGGCTCTGACTTCAGCGAC- 22913056 Query 14230 ATTGTACTTCC 14240 ||| |||||| Sbjct 22913055 -TTGAACTTCC 22913046 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479726860646000