Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20sativus_20[refseq_20GCF_5F000004075.2_202014-10-27] 190 sequences; 195,669,205 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq3 136 4e-27 >seq3 Length=39782674 Score = 136 bits (150), Expect = 4e-27 Identities = 418/638 (66%), Gaps = 15/638 (2%) Strand=Plus/Minus Query 13369 TTTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATTT 13428 ||||||||||| | ||||||||| ||||| || ||||| || |||| || || || Sbjct 22913702 TTTTGATATTCCCCAACTCTTTTCTCAAAGAAATTAGTCTTCCCTTGCAAGGAAATCAAC 22913643 Query 13429 TCCATAAAATCGAATGGATTTGTTGACATAA-ACACTTTATCACAACCTAGTTCTAATAA 13487 ||||| |||| ||||||||| | |||| | | ||| ||| | || | | || | Sbjct 22913642 TCCATCCAATCAAATGGATTT-TGCACATTGTAGATTTTGTCATACCCCAATGCTCCAAC 22913584 Query 13488 TAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAG 13547 |||||||| || | ||| ||||| ||||| ||| | || | |||||| || | ||| Sbjct 22913583 CAATCTATCTGCCACAAATTCAATGTATTGGCTCATAAGGTCTCCATTCATTCCAACTAG 22913524 Query 13548 TTTTACAGGAATTATATTAGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAAT 13607 || || | || | | ||||| | |||||| ||||||||| |||| Sbjct 22913523 AGCCACCGGCAAAGCATCACAAACGAATTCCCTCTCTATATTCACAGCCTCC---ATAAC 22913467 Query 13608 AATCTTAATAATGTCATT-AGAAGGAGGATATT--TTAG--ATGTTTAAAAATTAAACAC 13662 ||||| | | || | | | | || | | | | || || ||||| Sbjct 22913466 AATCTCCTTCACTCGATCCACATTCAATTTCTTCCTCAACAACGAATACAAC--AAACAT 22913409 Query 13663 GCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCT 13722 ||||||||||||||||| || |||||||| ||| | |||||||| ||||||| ||| Sbjct 22913408 GCAAAATCACAATGAAGACCTTCATCTCTTGAAATCAACTCGTTTGAGAATGTTAGTCCA 22913349 Query 13723 GGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATT 13782 ||||| || || |||||||| ||||| || || | | ||| || || ||||| ||| Sbjct 22913348 GGCATTAACCCACGTTTTTTCAACCAGAAAATAGAACAGAAACTACCTGAGAAGAAAATT 22913289 Query 13783 CCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGATATC 13842 |||||||| |||||| || | | || || |||| || | | ||| ||| Sbjct 22913288 CCCTCAACACAAGCAAATGCCAAAATCCGCTCAGCAAATGACTCCGTGCTGT---CAATC 22913232 Query 13843 CATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCATTGAAT 13902 || || ||||| || | || || || | | | | || || || |||| || Sbjct 22913231 CACTTCAACGCCCAATCGGCCTTCTTCTTGACACAGGGGACAGTATCAATAGCATGAAAC 22913172 Query 13903 AAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCA 13962 || | | |||||| || | | | ||||| || || | || | |||||||| || Sbjct 22913171 AAGCGATTCTTCTCATTCGAATCTTTGATGTAAGTTTCGAGGAGAAGACTATACATCTCG 22913112 Query 13963 GAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAA 14000 || || ||||| || ||||| || || ||||| || || Sbjct 22913111 GAATGAATGTTCTCGATAGCAATTTGGAAACCGTAGAA 22913074 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478587663351600