Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20sativus_20[refseq_20GCF_5F000004075.2_202014-10-27] 190 sequences; 195,669,205 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq1 93.3 3e-14 seq3 89.7 4e-13 >seq1 Length=29149675 Score = 93.3 bits (102), Expect = 3e-14 Identities = 138/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 42918 CTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAA 42977 ||||||||| | |||||||| | || || | | | || |||| || || |||||||| Sbjct 6810886 CTCCTTTTGAATGTTGTAATCCGCCAGAGTCCTTCCATCCTCCAGCTGCTTTCCGGCAAA 6810945 Query 42978 AATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGA-TCAACTCTTTGACTC 43036 ||||| | ||| || || | || | ||||| || || |||| || | || || Sbjct 6810946 GATCAACCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTC-CTGAATCTTGGCCTTCACGT 6811004 Query 43037 TGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCA 43096 || ||| |||||| || ||| || || | || || || |||||||| |||||||| | Sbjct 6811005 TGTCAATTGTGTCTGAAGACTCAACCTCCAAGGTAATGGTCTTTCCGGTGAGAGTTTTGA 6811064 Query 43097 CAAAAATTTGCAT 43109 ||||||||||||| Sbjct 6811065 CAAAAATTTGCAT 6811077 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 42882 GCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGA 42941 ||| ||||| || | | ||| | |||| ||| ||||| || | ||||||||||| Sbjct 6811437 GCCACCACGGAGCCGGAGCACGAGGTGGAGAGTTGATTCCTTCTGGATATTGTAATCGGC 6811496 Query 42942 CAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGG 43001 | || || |||| || | ||| || || || || |||||||| || || || | || Sbjct 6811497 AAGGGTTCGGCCGTCCTCAAGTTGCTTTCCAGCGAAGATCAATCGTTGCTGGTCCGGGGG 6811556 Query 43002 CACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGAC 43061 | ||||| || || |||| |||| || || ||| ||||| || ||| || Sbjct 6811557 GATTCCTTCCTTATCCTGGATCTTGGCTTTAACGTTGTCAATAGTGTCAGAAGACTCCAC 6811616 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || || || |||||||| || ||||| ||||| || ||||| Sbjct 6811617 CTCAAGGGTGATTGTCTTTCCGGTAAGGGTTTTTACAAAGATCTGCAT 6811664 >seq3 Length=39782674 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 42907 TGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGT 42966 |||| ||| ||| || || | ||||||||| | |||||| || | || ||||||||| Sbjct 19996298 TGGAGTGTGGACTCTTTCTGGATATTGTAATCAGCCAATGTCCGACCATCCTCCAATTGT 19996239 Query 42967 TTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGATCAAC 43026 || || ||||| |||| || ||||||||| | || | || ||||| || ||| | Sbjct 19996238 TTTCCAGCAAAGATCAGTCTCTGTTGATCTGGAGGAATCCCCTCTTTGTCTTGAATCTTC 19996179 Query 43027 TCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTT 43086 | || || || ||| ||||| | ||||| || | || || || || || ||| Sbjct 19996178 GCCTTCACATTGTCAATGGTGTCCGAACTTTCGACTTCCAATGTGATTGTCTTCCCTGTT 19996119 Query 43087 AGAGTTTTCACAAAAATTTGCATT 43110 | || ||||| ||||| |||||| Sbjct 19996118 AATGTCTTCACGAAAATCTGCATT 19996095 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381368716891020