Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20sativus_20[refseq_20GCF_5F000004075.2_202014-10-27] 190 sequences; 195,669,205 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq3 257 2e-63 seq6 107 3e-18 >seq3 Length=39782674 Score = 257 bits (284), Expect = 2e-63 Identities = 590/883 (67%), Gaps = 34/883 (4%) Strand=Plus/Minus Query 41774 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTCCAATGATATATTT 41833 ||||| ||||| || || | ||| || || ||||||||||| |||| ||| || || Sbjct 22913702 TTTTGATATTCCCCAACTCTTTTCTCAAAGAAATTAGTCTTCCCTTGCAAGGAAATCAAC 22913643 Query 41834 TCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATC 41893 ||||| ||||||| ||||| ||||| || ||||| | | | |||||| | || | Sbjct 22913642 TCCATCCAATCAAATGGATTTTGCACATTGTAGATTTTGTCATACCCCAATGCTCCAACC 22913583 Query 41894 AATCTATCTGCGATGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGT 41953 ||||||||||| | ||||| || ||| |||| | || | ||||||||| | || Sbjct 22913582 AATCTATCTGCCACAAATTCAATGTATTGGCTCATAAGGTCTCCATTCATTCCAACTAGA 22913523 Query 41954 TTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATA 42013 || || | ||| || || ||||| || ||| || || || |||| | Sbjct 22913522 GCCACCGGCAAAGCATCACAAACGAATTCCCTCTCTATATTCACAGCCTCC---ATAACA 22913466 Query 42014 GATCTTACTGTTTCTTCACTCGGTGGATACAATAAATGTTT-------------AAACAT 42060 |||| ||||||||| | | || | ||| | | | ||| Sbjct 22913465 -ATCTC-------CTTCACTCGATCCA--CATTCAATTTCTTCCTCAACAACGAATACAA 22913416 Query 42061 CAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGT 42120 ||||||||| ||||| || || ||||| |||||||| ||| || ||||| || || || Sbjct 22913415 CAAACATGCAAAATCACAATGAAGACCTTCATCTCTTGAAATCAACTCGTTTGAGAATGT 22913356 Query 42121 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGA-CGCAAATGATCCAGAAA 42179 ||||| ||||||| ||||| ||||| | ||| || ||||| | ||| | || || | Sbjct 22913355 TAGTCCAGGCATTAACCCACGTTTTTTCAACCAGAAAATAGAACAGAAACTA-CCTGAGA 22913297 Query 42180 AGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATA--AC-CGGCACTGT 42236 |||| ||||| || || ||||| || | || | ||| || | || | | |||| Sbjct 22913296 AGAAAATTCCCTCAACACAAGCAAATGCCAAAATCCGCTCAGCAAATGACTCCGTGCTGT 22913237 Query 42237 CATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGG 42296 || |||||||| ||||||||||||||||| || ||||| || | || || || | Sbjct 22913236 CA---ATCCACTTCAACGCCCAATCGGCCTTCTTCTTGACACAGGGGACAGTATCAATAG 22913180 Query 42297 CATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTAT 42356 ||| ||| | || || ||||| |||||| | || || |||| | |||||||| Sbjct 22913179 CATGAAACAAGCGATTCTTCTCATTCGAATCTTTGATGTAAGTTTCGAGGAGAAGACTAT 22913120 Query 42357 ACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGG 42416 |||| || ||||||||||| || || || || || || |||||||| |||| | || | Sbjct 22913119 ACATCTCGGAATGAATGTTCTCGATAGCAATTTGGAAACCGTAGAAGGCTCTGACTTCAG 22913060 Query 42417 TAACCTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGG 42476 || || ||||| | || || | || | || || || || || ||| || Sbjct 22913059 CGACTTGAACTTCCTTCATGAACCGACCGGCAAGGTTCTCCAAGACGATACCATCAGAGG 22913000 Query 42477 CTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAATTTATTCC 42536 | || || || || | || || | || |||| || ||||| | ||||| || || Sbjct 22912999 CAGCGAAGAAGGCAAGGACGTGAGTGATGAAATGCTTCTCGTCGGAAGTTAAGGAATCCC 22912940 Query 42537 AATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCT 42596 ||| | |||| ||| | ||| || ||||| | ||||| || || ||||| |||| Sbjct 22912939 AATGGCGAGTGTCTTGAGAGAGATCGACCTCTTCGGCGGTCCAGAAGGAGGCTTCGGCCT 22912880 Query 42597 TTTTATACATATTCCAGATATCATGATATTGAATTGGGAAAAT 42639 | || ||||| | |||||| | |||||||||| ||||| || Sbjct 22912879 TCTTGTACATCTCCCAGATTTGGGGATATTGAATGGGGAACAT 22912837 >seq6 Length=29076228 Score = 107 bits (118), Expect = 3e-18 Identities = 157/222 (71%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 72177 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 72236 |||||| ||||| | |||| ||| || | ||| | || | || ||| || | |||||| Sbjct 22590412 TCCTCCTTGATCAACATATCGAGCAGTATCATTGAATACCCGCAGCATAGGCAAAATACC 22590353 Query 72237 ATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAATTGA 72296 ||| |||| ||||| || || ||||| || || |||||||||||||| || || Sbjct 22590352 ATTAGATGTCCCATTTGTTCCACGAATATAACTACCCATGGCACGAATATTGTGGATGGA 22590293 Query 72297 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 72356 | ||| || || || ||| || ||| | || || |||||| |||||||| || Sbjct 22590292 AACACCAATACCACCAGCCGACTTGCTGATAACAGCACACTCTTTTAAGGTATCATATAT 22590233 Query 72357 GCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCT 72398 || ||||||||||| ||| ||||| | || |||||||| Sbjct 22590232 TCCTTCTATACTATCCTCCTTCATGCATATAAGGAAACAGCT 22590191 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671137606044400