Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20sativus_20[refseq_20GCF_5F000004075.2_202014-10-27] 190 sequences; 195,669,205 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq6 109 4e-19 seq3 104 2e-17 seq1 102 6e-17 >seq6 Length=29076228 Score = 109 bits (120), Expect = 4e-19 Identities = 148/204 (73%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 ||||||||||| || || || ||||||||||| ||| | ||| | ||||| | || Sbjct 26766906 TGAAGGGTGGACTCCTTCTGAATGTTGTAATCAGCGAGAGTCCTCCCATCTTCAAGCTGC 26766965 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTT- 15279 || |||||| | ||||| | || ||||| || || ||||| ||||| |||||| Sbjct 26766966 TTCCCAGCGAAGATCAACCTCTGCTGGTCCGGAGGGATGCCTTCCTTGTCCTGAATTTTA 26767025 Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339 ||| || ||| | || || || ||| | || || || ||||| ||||| || || || Sbjct 26767026 GCT-TTCACATTATCGATCGTGTCGGAGCTCTCCACCTCCAAGGTGATGGTCTTTCCAGT 26767084 Query 15340 CAGAGTTTTTACAAAAATTTGCAT 15363 ||| || || |||||||||||||| Sbjct 26767085 CAGGGTCTTAACAAAAATTTGCAT 26767108 Score = 87.8 bits (96), Expect = 1e-12 Identities = 144/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 || |||||||| || || || ||||| ||||| || | | |||| |||| ||| Sbjct 26767590 TGGAGGGTGGACTCCTTCTGGATGTTATAATCAGCAAGGGTACGGCCGTCCTCTAGTTGC 26767649 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAAT-TTT 15279 || || || | || | | ||||||||| |||||||| || ||||| || ||| Sbjct 26767650 TTACCGGCAAAGATGAGTCTTTGTTGGTCTGGGGGAATTCCCTCCTTGTCCTGGATCTTT 26767709 Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339 || ||| || | || |||||||| ||| || || | ||| ||||||||||| || Sbjct 26767710 GC-CTTCACGTTATCGATGGTATCAGAGGATTCGACCTCGAGGGTGATGGTTTTACCCGT 26767768 Query 15340 CAGAGTTTTTACAAAAATTTGCATA 15364 ||| || || || |||||||||||| Sbjct 26767769 CAGGGTCTTAACGAAAATTTGCATA 26767793 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || ||||| | ||| || || || || ||||||||||| ||| | || | ||||| Sbjct 26767128 ACCAAATGCAAGGTTGACTCCTTCTGAATGTTGTAATCAGCCAGAGTCCTTCCATCTTCA 26767187 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | || || |||||| | ||||| | || ||||| ||| ||||| || ||||| Sbjct 26767188 AGCTGCTTCCCAGCGAAGATCAACCTCTGCTGGTCTGGTGGGATTCCCTCCTTGTCTTGG 26767247 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 || || ||| || | || ||||| || | || || |||| ||| ||||| || Sbjct 26767248 ATCTTAGCCTTGACGTTATCAATGGTGTCAGAGCTCTCAACCTCTAGGGTGATGGTCTTT 26767307 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || |||| || || |||||||| |||||| Sbjct 26767308 CCGGTCAACGTCTTGACAAAAATCTGCATA 26767337 >seq3 Length=39782674 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||| | | ||| | || ||||| || || || || || || || ||||||||| Sbjct 19995638 CCACCGCGAAGTCTAAGCACCAAATGGAGTGTAGATTCCTTCTGGATATTGTAATCGGCA 19995579 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || ||| |||| || | ||| || ||||| | || | | ||||||||| |||| Sbjct 19995578 AGCGTTCGGCCGTCCTCAAGTTGCTTACCAGCAAAGATAAGCCTCTGTTGGTCGGGTGGA 19995519 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 || || ||||| || |||||| ||||||| | || || ||||| |||| || Sbjct 19995518 ATGCCCTCTTTATCTTGAATTTTTGCCTTTACATTGTCAATTGTATCAGAGCTTTCCACC 19995459 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || | ||| || ||||| || || ||||||||||| || |||||||| Sbjct 19995458 TCGAGGGTGATTGTTTTGCCAGTGAGAGTTTTTACGAATATTTGCAT 19995412 Score = 95.1 bits (104), Expect = 9e-15 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||| | ||||| | |||||||| | || || || ||||| ||||| ||||| Sbjct 19996094 CCACCGCGCAATCGGAGCACTAAATGCAACGTTGATTCCTTTTGAATGTTATAATCTGCC 19996035 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 ||| | || | ||||| | || || ||||| | ||||| | |||||||| |||| Sbjct 19996034 AGAGTCCTGCCATCTTCAAGCTGCTTACCAGCAAAAATCAACCTCTGTTGGTCCGGTGGA 19995975 Query 15257 ATTCCTTCTTTGTCACAAATTTT-GCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315 || || || || || || || ||| || ||| | || || ||||| | || || Sbjct 19995974 ATACCCTCCTTATCTTGGATCTTAGCT-TTCACATTATCAATTGTATCAGAGCTCTCCAC 19995916 Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || |||||||| ||||| || || | ||||| ||||||||||||||| Sbjct 19995915 TTCCAAGGTAATTGTTTTCCCGGTTAAGGTTTTCACAAAAATTTGCATA 19995867 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213 ||| ||||| || || || || || || || ||||| || ||| ||| | || || Sbjct 19995849 AACCAAATGCAGAGTAGATTCCTTCTGAATATTGTAGTCAGCGAGAGTTCGACCATCCTC 19995790 Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273 | || || ||||| | || | | |||||||| ||| || ||||| ||||| Sbjct 19995789 GAGCTGCTTACCAGCAAAAATAAGTCTCTGTTGGTCAGGTGGTATACCTTCCTTGTCTTG 19995730 Query 15274 AATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 |||||| ||| ||| | || |||||||| | |||| || || | |||||||||||| Sbjct 19995729 AATTTTAGCCTTGACATTGTCAATGGTATCAGAACTTTCCACCTCAAGGGTAATGGTTTT 19995670 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || || || || ||||| |||||||| Sbjct 19995669 GCCAGTAAGGGTCTTCACAAATATTTGCAT 19995640 >seq1 Length=29149675 Score = 102 bits (112), Expect = 6e-17 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 ||||||||||| || ||||| ||||||||||| ||| | || | || || | || Sbjct 6810875 TGAAGGGTGGACTCCTTTTGAATGTTGTAATCCGCCAGAGTCCTTCCATCCTCCAGCTGC 6810934 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280 || || || | ||||| | || ||||| ||||| ||||| ||||| ||| ||| Sbjct 6810935 TTTCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTCCTGAATCTTG 6810994 Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340 ||| || | || || || || | || || || ||||||||||| || || || Sbjct 6810995 GCCTTCACGTTGTCAATTGTGTCTGAAGACTCAACCTCCAAGGTAATGGTCTTTCCGGTG 6811054 Query 15341 AGAGTTTTTACAAAAATTTGCATA 15364 |||||||| ||||||||||||||| Sbjct 6811055 AGAGTTTTGACAAAAATTTGCATA 6811078 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 15160 ATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTG 15219 |||||| ||||| || || || |||||||||||| || ||| | ||||| || || Sbjct 6811233 ATGAAGAGTGGATTCCTTCTGGATGTTGTAATCGGCAAGTGTTCGTCCATCTTCCAACTG 6811292 Query 15220 TTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTT 15279 || || ||| | |||| | ||| ||||| ||||| ||||| || || || || Sbjct 6811293 CTTTCCGGCGAAGATCAGTCTTTGCTGGTCTGGGGGAATACCTTCCTTATCCTGGATCTT 6811352 Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339 | ||| || | || ||||||||| || || || | ||| || || || || || Sbjct 6811353 GGCCTTGACGTTATCAATGGTATCGGAGGACTCCACCTCGAGGGTGATAGTCTTTCCGGT 6811412 Query 15340 CAGAGTTTTTACAAAAATTTGCAT 15363 ||||| || ||||| |||||||| Sbjct 6811413 AAGAGTCTTGACAAAGATTTGCAT 6811436 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362178361328790