Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20sativus_20[refseq_20GCF_5F000004075.2_202014-10-27] 190 sequences; 195,669,205 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq1 104 2e-17 seq3 102 7e-17 >seq1 Length=29149675 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 18845 GTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCC 18904 || |||||||||||||| ||||||||||||| || | | ||||||||||| || || Sbjct 6810881 GTGGACTCCTTTTGAATGTTGTAATCCGCCAGAGTCCTTCCATCCTCCAGCTGCTTTCCG 6810940 Query 18905 GCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTT 18964 ||| | || | |||||||| || ||| | ||| || ||||| ||| || || Sbjct 6810941 GCAAAGATCAACCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTCCTGAATCTTGGCCTTC 6811000 Query 18965 ACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGTT 19024 || | | | | || || || ||| || | ||||||||| || || || | |||| Sbjct 6811001 ACGTTGTCAATTGTGTCTGAAGACTCAACCTCCAAGGTAATGGTCTTTCCGGTGAGAGTT 6811060 Query 19025 TTGACAAAAATTTGCAT 19041 ||||||||||||||||| Sbjct 6811061 TTGACAAAAATTTGCAT 6811077 >seq3 Length=39782674 Score = 102 bits (112), Expect = 7e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 18813 TTCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCG 18872 |||| || ||||| | | ||| | |||||||| || ||||||||||| || ||||| | Sbjct 19996096 TTCCACCGCGCAATCGGAGCACTAAATGCAACGTTGATTCCTTTTGAATGTTATAATCTG 19996037 Query 18873 CCATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGG 18932 ||| || || | || || ||||| ||||| ||| |||| | ||||| || ||| | Sbjct 19996036 CCAGAGTCCTGCCATCTTCAAGCTGCTTACCAGCAAAAATCAACCTCTGTTGGTCCGGTG 19995977 Query 18933 GCACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCG 18992 | | ||||| || || || || ||| || | | | ||||| |||| Sbjct 19995976 GAATACCCTCCTTATCTTGGATCTTAGCTTTCACATTATCAATTGTATCAGAGCTCTCCA 19995917 Query 18993 TTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 ||| | |||||| ||||| || ||||| ||||| |||||||||||||| Sbjct 19995916 CTTCCAAGGTAATTGTTTTCCCGGTTAAGGTTTTCACAAAAATTTGCAT 19995868 Score = 93.3 bits (102), Expect = 4e-14 Identities = 150/213 (70%), Gaps = 6/213 (3%) Strand=Plus/Minus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||||| || | ||||| ||||| || ||||||||||| || | ||| | ||||||| Sbjct 19995621 CACCAAATGGAGTGTAGATTCCTTCTGGATATTGTAATCGGCAAGCGTTCGGCCGTCCTC 19995562 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 || || ||||| ||| | ||||| ||||| || || || | ||||||||| || Sbjct 19995561 AAGTTGCTTACCAGCAAAGATAAGCCTCTGTTGGTCGGGTGGAATGCCCTCTTTATCTTG 19995502 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAG-GC--TCCGTTTCGACGGTAATGGT 19008 |||||| ||||| | | | | |||| ||| || ||| |||| ||| || || Sbjct 19995501 AATTTTTGCCTTTACATTGTCAATTGTAT---CAGAGCTTTCCACCTCGAGGGTGATTGT 19995445 Query 19009 TTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 ||| || || | |||||| || || |||||||| Sbjct 19995444 TTTGCCAGTGAGAGTTTTTACGAATATTTGCAT 19995412 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 18833 ACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCC 18892 |||| |||| ||||| ||||| ||||||||||| || || | ||| | ||||| Sbjct 19995848 ACCAAATGCAGAGTAGATTCCTTCTGAATATTGTAGTCAGCGAGAGTTCGACCATCCTCG 19995789 Query 18893 AGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCA 18952 ||||| ||||| ||| ||||||||||||| || || || | || || ||||| | Sbjct 19995788 AGCTGCTTACCAGCAAAAATAAGTCTCTGTTGGTCAGGTGGTATACCTTCCTTGTCTTGA 19995729 Query 18953 ATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTA 19012 ||||| || || | | | | ||||| | ||| || | |||||||||||| Sbjct 19995728 ATTTTAGCCTTGACATTGTCAATGGTATCAGAACTTTCCACCTCAAGGGTAATGGTTTTG 19995669 Query 19013 CCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || || | || || ||||| |||||||| Sbjct 19995668 CCAGTAAGGGTCTTCACAAATATTTGCAT 19995640 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414571840004860