Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20sativus_20[refseq_20GCF_5F000004075.2_202014-10-27] 190 sequences; 195,669,205 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq3 98.7 7e-16 >seq3 Length=39782674 Score = 98.7 bits (108), Expect = 7e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTT 43954 || || | ||||| | ||| ||||| | ||| || |||||||| |||||||| Sbjct 19996094 CCACCGCGCAATCGGAGCACTAAATGCAACGTTGATTCCTTTTGAATGTTATAATCTGCC 19996035 Query 43955 A-ATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 | | | || |||| || | || || || ||||| ||||||| || |||||| | || Sbjct 19996034 AGAGTCCTGC-CATCTTCAAGCTGCTTACCAGCAAAAATCAACCTCTGTTGGTCCGGTGG 19995976 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | ||| || |||||| || || ||| || || ||| ||||| | |||||| Sbjct 19995975 AATACCCTCCTTATCTTGGATCTTAGCTTTCACATTATCAATTGTATCAGAGCTCTCCAC 19995916 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | ||||||||||| |||||||| || |||||||| |||||||| Sbjct 19995915 TTCCAAGGTAATTGTTTTCCCGGTTAAGGTTTTCACAAAAATTTGCAT 19995868 Score = 87.8 bits (96), Expect = 1e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 43919 TGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCCAATTGT 43978 || || ||| ||| |||||||| || |||||| | | ||| |||| |||||||| Sbjct 4360600 TGGAGGGTGGACTCCTTTTGAATGTTGTAATCGGCCAGTGTACGTCCATCCTCCAATTGC 4360659 Query 43979 TTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTT 44038 ||||| || || || | | ||||||||| |||| | ||| || || || ||||| Sbjct 4360660 TTTCCAGCGAAAATTAGTCTTTGCTGGTCAGGAGGGATACCCTCCTTGTCCTGGATTTTA 4360719 Query 44039 TGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTT 44098 || || || ||| || |||| ||| || || | || || || || || || Sbjct 4360720 GCCTTAACGTTATCAATGGTGTCTGAGCTCTCAACCTCCAATGTGATGGTCTTTCCTGTC 4360779 Query 44099 AAAGTCTTCACAAATATTTGCAT 44121 || |||||||||||||||||||| Sbjct 4360780 AAGGTCTTCACAAATATTTGCAT 4360802 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354776778468120