Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20sativus_20[refseq_20GCF_5F000004075.2_202014-10-27] 190 sequences; 195,669,205 total letters Query= NC_005137.2 Length=131160 Score E Sequences producing significant alignments: (Bits) Value seq3 91.5 1e-13 seq1 87.8 2e-12 >seq3 Length=39782674 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 19999 CACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTC 20058 ||||||||| ||||||||||| || || || ||||||||| | | ||| || || Sbjct 19995621 CACCAAATGGAGTGTAGATTCCTTCTGGATATTGTAATCGGCAAGCGTTCGGCCGTCCTC 19995562 Query 20059 CAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGC 20118 | ||| || || ||| | |||||||||||||| ||| || | ||| ||||| || Sbjct 19995561 AAGTTGCTTACCAGCAAAGATAAGCCTCTGTTGGTCGGGTGGAATGCCCTCTTTATCTTG 19995502 Query 20119 AATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTT 20178 ||||||| || || | | ||| | ||| |||| || | ||| || ||||| Sbjct 19995501 AATTTTTGCCTTTACATTGTCAATTGTATCAGAGCTTTCCACCTCGAGGGTGATTGTTTT 19995442 Query 20179 GCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 ||| || | ||||| || || |||||||| Sbjct 19995441 GCCAGTGAGAGTTTTTACGAATATTTGCAT 19995412 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 20000 ACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCC 20059 |||||||| || |||||||| || || || ||||| || | | |||| | ||| || Sbjct 19995848 ACCAAATGCAGAGTAGATTCCTTCTGAATATTGTAGTCAGCGAGAGTTCGACCATCCTCG 19995789 Query 20060 AATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCA 20119 | || || || ||| ||||||| |||||||| || || | ||||| ||||| | Sbjct 19995788 AGCTGCTTACCAGCAAAAATAAGTCTCTGTTGGTCAGGTGGTATACCTTCCTTGTCTTGA 19995729 Query 20120 ATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTTG 20179 ||||| || || | | ||| | ||| | |||| || | ||||||||||||| Sbjct 19995728 ATTTTAGCCTTGACATTGTCAATGGTATCAGAACTTTCCACCTCAAGGGTAATGGTTTTG 19995669 Query 20180 CCGGTCAACGTTTTGACAAAAATTTGCAT 20208 || || | || || ||||| |||||||| Sbjct 19995668 CCAGTAAGGGTCTTCACAAATATTTGCAT 19995640 >seq1 Length=29149675 Score = 87.8 bits (96), Expect = 2e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 20006 TGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCCAATTGT 20065 || || || || || ||||| ||||||||||| ||| ||| | ||| |||| || Sbjct 6810875 TGAAGGGTGGACTCCTTTTGAATGTTGTAATCCGCCAGAGTCCTTCCATCCTCCAGCTGC 6810934 Query 20066 TTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCAATTTTT 20125 || || ||| | || | |||||| || || ||| | |||||| ||||| ||| || Sbjct 6810935 TTTCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTCCTGAATCTTG 6810994 Query 20126 TGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTTGCCGGTC 20185 ||||| | | ||| | || || || |||| ||||||||| || ||||| Sbjct 6810995 GCCTTCACGTTGTCAATTGTGTCTGAAGACTCAACCTCCAAGGTAATGGTCTTTCCGGTG 6811054 Query 20186 AACGTTTTGACAAAAATTTGCAT 20208 | |||||||||||||||||||| Sbjct 6811055 AGAGTTTTGACAAAAATTTGCAT 6811077 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419586228393390