Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20sativus_20[refseq_20GCF_5F000004075.2_202014-10-27] 190 sequences; 195,669,205 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq3 174 1e-38 >seq3 Length=39782674 Score = 174 bits (192), Expect = 1e-38 Identities = 455/684 (67%), Gaps = 15/684 (2%) Strand=Plus/Minus Query 12841 ATTTGACATAACAGACATTTTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTT 12900 ||||||||| ||||| ||||||||||| | ||||||||| ||||| || || || || Sbjct 22913721 ATTTGACATCACAGATGCCTTTTGATATTCCCCAACTCTTTTCTCAAAGAAATTAGTCTT 22913662 Query 12901 TCCTTCTAACGAAATATTTTCCATAAAATCGAAAGGATTTTTCGAACAATAGTATTTTTT 12960 |||| || ||||| ||||| |||| || ||||||| | | ||| ||| | Sbjct 22913661 CCCTTGCAAGGAAATCAACTCCATCCAATCAAATGGATTTTGCACATTGTAGATTTTGTC 22913602 Query 12961 ACACCCTAATTCTAGTAACAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATC 13020 | |||| ||| || | |||||| || || ||||| || ||||| || |||| | || Sbjct 22913601 ATACCCCAATGCTCCAACCAATCTATCTGCCACAAATTCAATGTATTGGCTCATAAGGTC 22913542 Query 13021 ACAGTTCATTCCTATTAATTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATC 13080 | |||||||| | || || |||| ||| || | || | | ||||||| Sbjct 22913541 TCCATTCATTCCAACTAGAGCCACCGGCAAAGCATCACAAACGAATTCCCTCTCTATATT 22913482 Query 13081 AACTGCTTCGATAACTATGTCTCTTATTACGTTCTCTAATGGAGGATTTGAT----AGAT 13136 || || || ||||| || || | | | || || | || | |||| | | Sbjct 22913481 CACAGCCTCCATAACAATCTCCTTCACT-CGATC-CACATTCA--ATTTCTTCCTCAACA 22913426 Query 13137 GCTTAAACATCATACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGT 13196 | | ||| || ||||||||||||||| || | ||||||||||| || | ||||| Sbjct 22913425 ACGAATACAACAAACATGCAAAATCACAATGAAGACCTTCATCTCTTGAAATCAACTCGT 22913366 Query 13197 TTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTTTAATCC--AAAATATAGCAGCAAA 13254 |||| |||||||| || ||||| | ||| |||||||| | || |||||| | ||| ||| Sbjct 22913365 TTGAGAATGTTAGTCCAGGCATTAACCCACGTTTTTTCAACCAGAAAATAGAACAG-AAA 22913307 Query 13255 CGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGT 13314 | ||| || || || ||||| ||||| ||||| || | | || ||| || | | Sbjct 22913306 C-TACCTGAGAAGAAAATTCCCTCAACACAAGCAAATGCCAAAATCCGCTCAGCAAATG- 22913249 Query 13315 ACTATTTTTACTCTCTATCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCAT 13374 || | | || || |||||||| ||||| | || || | || || ||| | Sbjct 22913248 AC--TCCGTGCTGTCAATCCACTTCAACGCCCAATCGGCCTTCTTCTTGACACAGGGGAC 22913191 Query 13375 ATTTTCTATTGCGTTAAATAAATAAtttttttCCTTACTGTCTAAAATATAAGTATCTAT 13434 | | || || || | ||| || ||| || || || ||| || ||||| || | Sbjct 22913190 AGTATCAATAGCATGAAACAAGCGATTCTTCTCATTCGAATCTTTGATGTAAGTTTCGAG 22913131 Query 13435 CAATAAGCTATACATTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACA 13494 | | |||||||| || |||||||| || || || || ||||||||||| || || Sbjct 22913130 GAGAAGACTATACATCTCGGAATGAATGTTCTCGATAGCAATTTGGAAACCGTAGAAGGC 22913071 Query 13495 TCTAGCCTCTGATACCTGAACTTC 13518 ||| | || | || |||||||| Sbjct 22913070 TCTGACTTCAGCGACTTGAACTTC 22913047 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430981402006380