Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20sativus_20[refseq_20GCF_5F000004075.2_202014-10-27] 190 sequences; 195,669,205 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq3 176 1e-38 seq2 147 5e-30 seq1 132 1e-25 seq6 104 5e-17 seq5 86.0 1e-11 >seq3 Length=39782674 Score = 176 bits (194), Expect = 1e-38 Identities = 177/230 (77%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || ||||| | || | ||| || | ||| | |||||||| ||||||||||| |||||| Sbjct 19995869 ATACCCCCACGAAGACGAAGAACCAAATGCAGAGTAGATTCCTTCTGAATATTGTAGTCA 19995810 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 | ||||||| ||| || || || || || ||||||||||| || |||||||| ||||| Sbjct 19995809 GCGAGAGTTCGACCATCCTCGAGCTGCTTACCAGCAAAAATAAGTCTCTGTTGGTCAGGT 19995750 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 ||||| ||||| || || ||||| || || || ||||| || | |||||| | ||| Sbjct 19995749 GGTATACCTTCCTTGTCTTGAATTTTAGCCTTGACATTGTCAATGGTATCAGAACTTTCC 19995690 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| || ||||| || || |||||||| || || |||||||| ||||| Sbjct 19995689 ACCTCAAGGGTAATGGTTTTGCCAGTAAGGGTCTTCACAAATATTTGCAT 19995640 Score = 161 bits (178), Expect = 2e-34 Identities = 169/221 (76%), Gaps = 6/221 (3%) Strand=Plus/Minus Query 104342 AGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTA 104401 || ||||| || | ||| | ||||||||| ||||| ||||| || || | || |||| Sbjct 19995629 AGTCTAAGCACCAAATGGAGTGTAGATTCCTTCTGGATATTGTAATCGGCAAGCGTTCGG 19995570 Query 104402 CCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCT 104461 ||||| || ||||| || |||||||| || ||||||||||| || || || || || ||| Sbjct 19995569 CCGTCCTCAAGTTGCTTACCAGCAAAGATAAGCCTCTGTTGGTCGGGTGGAATGCCCTCT 19995510 Query 104462 TTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATC---GCTAGGTTCTACCTCTAGT 104518 ||||| ||||| ||||| |||||||| || | ||||| ||| ||| ||||| || Sbjct 19995509 TTATCTTGAATTTTTGCCTTTACATTGTCAATTGTATCAGAGCT---TTCCACCTCGAGG 19995453 Query 104519 GTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || || || ||||| || |||||||| ||||| ||||| Sbjct 19995452 GTGATTGTTTTGCCAGTGAGAGTTTTTACGAATATTTGCAT 19995412 Score = 136 bits (150), Expect = 9e-27 Identities = 158/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 || || || || | ||| || |||||||| ||||| || |||| | || | ||| || Sbjct 19996307 AGGACAAGGTGGAGTGTGGACTCTTTCTGGATATTGTAATCAGCCAATGTCCGACCATCC 19996248 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 || | ||||||||||||||| || || ||||||||||| ||||| || || ||||| || Sbjct 19996247 TCCAATTGTTTTCCAGCAAAGATCAGTCTCTGTTGATCTGGAGGAATCCCCTCTTTGTCT 19996188 Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527 |||||||| || || ||||| || | ||| || | ||| || || | ||| || ||| Sbjct 19996187 TGAATCTTCGCCTTCACATTGTCAATGGTGTCCGAACTTTCGACTTCCAATGTGATTGTC 19996128 Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560 || || || | ||| || || || ||||||||| Sbjct 19996127 TTCCCTGTTAATGTCTTCACGAAAATCTGCATT 19996095 Score = 125 bits (138), Expect = 2e-23 Identities = 157/213 (74%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 || |||| ||| || || ||||| || ||||| ||||| || | ||||| || || ||| Sbjct 19996079 AGCACTAAATGCAACGTTGATTCCTTTTGAATGTTATAATCTGCCAGAGTCCTGCCATCT 19996020 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 || || || || ||||||||||| | ||||||||| || || || || || || ||||| Sbjct 19996019 TCAAGCTGCTTACCAGCAAAAATCAACCTCTGTTGGTCCGGTGGAATACCCTCCTTATCT 19995960 Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGT-TCTACCTCTAGTGTAATAGT 104526 || ||||| ||||| ||||| || | ||||| || | || || || | ||||| || Sbjct 19995959 TGGATCTTAGCTTTCACATTATCAATTGTATC-AGAGCTCTCCACTTCCAAGGTAATTGT 19995901 Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || || | ||||| ||||| || ||||| Sbjct 19995900 TTTCCCGGTTAAGGTTTTCACAAAAATTTGCAT 19995868 Score = 107 bits (118), Expect = 4e-18 Identities = 140/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 104366 GATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCA 104425 ||||| | ||||| |||||||| | || ||| ||| ||||| | ||| | ||||| Sbjct 4360837 GATTCCGTTTGAATGTTATAGTCGGCTATAGTCTTACTATCTTCCAATTGCCTACCAGCT 4360896 Query 104426 AAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACA 104485 ||||||| |||||||| | || || || || ||| |||| |||||||| || |||||| Sbjct 4360897 AAAATTAATCTCTGTTGGTATGGTGGGATGCCCTCTATATCTTGAATCTTAGCCTTTACA 4360956 Query 104486 TTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTT 104545 ||||| | ||||| | ||| ||||| || || | ||||| | || ||||| Sbjct 4360957 TTTTCGATAGTATCAGAATTTTCAACCTCAAGGGTTAGTGTCTTTCTGTGGAGAGTTTTC 4361016 Query 104546 ACAAATATCTGCAT 104559 ||||| || ||||| Sbjct 4361017 ACAAAGATTTGCAT 4361030 >seq2 Length=23174626 Score = 147 bits (162), Expect = 5e-30 Identities = 167/224 (75%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 104342 AGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTA 104401 ||||| | || ||||| | |||||||| ||||| || || ||||| | || |||| | Sbjct 15735217 AGCCTTAAGACAAGATGGAGCGTAGATTCCTTCTGGATGTTGTAGTCGGCAAGTGTTCGA 15735276 Query 104402 CCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCT 104461 || || || || || || || || || || || | ||| || ||||| ||||||||||| Sbjct 15735277 CCATCCTCCAGCTGCTTACCGGCGAAGATGAGACGCTGCTGGTCAGGCGGTATTCCTTCC 15735336 Query 104462 TTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTA 104521 || |||||||||||||| || ||||| || | |||||| | || ||||| || || Sbjct 15735337 TTGTCCTGAATCTTTGCCTTGACATTATCGATGGTATCAGAACTCTCGACCTCGAGAGTT 15735396 Query 104522 ATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTGTG 104565 || ||||| || ||||| ||||| || || |||||||| |||| Sbjct 15735397 ATGGTCTTCCCGGTAAGCGTTTTCACGAAGATCTGCATAGTGTG 15735440 >seq1 Length=29149675 Score = 132 bits (146), Expect = 1e-25 Identities = 160/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 104342 AGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTA 104401 |||| || || || || | || ||||| ||||| ||||| || || | || |||| Sbjct 6811447 AGCCGGAGCACGAGGTGGAGAGTTGATTCCTTCTGGATATTGTAATCGGCAAGGGTTCGG 6811506 Query 104402 CCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCT 104461 ||||| || ||||| |||||||| || || | | || || || || || |||||||| Sbjct 6811507 CCGTCCTCAAGTTGCTTTCCAGCGAAGATCAATCGTTGCTGGTCCGGGGGGATTCCTTCC 6811566 Query 104462 TTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTA 104521 |||||||| ||||| ||||| || || || | || || || || ||||| || || Sbjct 6811567 TTATCCTGGATCTTGGCTTTAACGTTGTCAATAGTGTCAGAAGACTCCACCTCAAGGGTG 6811626 Query 104522 ATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || ||||| || ||||| ||||||||||| |||||||| Sbjct 6811627 ATTGTCTTTCCGGTAAGGGTTTTTACAAAGATCTGCAT 6811664 Score = 118 bits (130), Expect = 2e-21 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 ||||| || || || | ||| || || || | || || || || ||||| || || || Sbjct 6810848 ATTCCTCCCCTCAGACGAAGAACAAGGTGAAGGGTGGACTCCTTTTGAATGTTGTAATCC 6810907 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 | ||||| || || || || || || ||||| ||||| || | |||||| || || || Sbjct 6810908 GCCAGAGTCCTTCCATCCTCCAGCTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCTGGG 6810967 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||| || ||||||||||| || || || || || | || || || || Sbjct 6810968 GGAATGCCTTCCTTGTCCTGAATCTTGGCCTTCACGTTGTCAATTGTGTCTGAAGACTCA 6811027 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| | ||||| ||||| || || || ||||| ||||| || ||||| Sbjct 6811028 ACCTCCAAGGTAATGGTCTTTCCGGTGAGAGTTTTGACAAAAATTTGCAT 6811077 Score = 109 bits (120), Expect = 1e-18 Identities = 155/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 104342 AGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTA 104401 ||||| || || || || | || ||||||||||| || || ||||| | ||||||| Sbjct 6811675 AGCCTTAGGACAAGGTGAAGAGTTGATTCTTTCTGGATGTTGTAGTCTGCAAGAGTTCGG 6811734 Query 104402 CCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCT 104461 || || || ||||| || || || || || | | || ||||| || || || ||||| Sbjct 6811735 CCATCCTCAAGTTGCTTGCCGGCGAAGATCAATCGTTGCTGATCCGGTGGAATCCCTTCC 6811794 Query 104462 TTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTA 104521 |||||||| || || || || || || || | ||| ||| || || ||||| || || Sbjct 6811795 TTATCCTGGATTTTAGCCTTAACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTG 6811854 Query 104522 ATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || ||||| || || || || || || || || ||||| Sbjct 6811855 ATGGTCTTTCCTGTGAGGGTCTTAACGAAGATTTGCAT 6811892 >seq6 Length=29076228 Score = 104 bits (114), Expect = 5e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||| || || ||||| | | || | || || || |||||||||||| Sbjct 26768052 GTGGACTCCTTCTGGATGTTGTAGTCGGCCAAGGTACGGCCATCCTCGAGTTGTTTTCCA 26768111 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || || | || ||||| || || |||||||| || ||||| ||||| || || Sbjct 26768112 GCGAAGATGAGACGTTGCTGATCCGGGGGAATTCCTTCCTTGTCCTGGATCTTGGCCTTG 26768171 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || || || | ||||| | || ||||| || || || |||||||| || || ||| Sbjct 26768172 ACGTTGTCGATCGTATCAGACGACTCAACCTCAAGGGTGATTGTCTTACCGGTTAGGGTT 26768231 Query 104543 TTTACAAATATCTGCAT 104559 || || || || ||||| Sbjct 26768232 TTAACGAAGATTTGCAT 26768248 Score = 86.0 bits (94), Expect = 1e-11 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || || ||||| ||||| || | || |||| ||| ||||| | ||| || ||| Sbjct 9620120 GTTGACTCCTTTTGAATGTTATAATCTGCAAGCGTTCGACCATCTTCCAATTGCTTACCA 9620179 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAAT 104472 |||||||||| ||||| || |||||||| || ||||| || ||||| || Sbjct 9620180 GCAAAAATTAATCTCTGCTGGTCAGGAGGAATACCTTCCTTGTCCTGCAT 9620229 >seq5 Length=28023477 Score = 86.0 bits (94), Expect = 1e-11 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 104456 CCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCT 104515 || || |||||||||||||| || || ||||| || | ||| ||||| | || || || Sbjct 3403350 CCCTCCTTATCCTGAATCTTGGCCTTGACATTGTCAATGGTGTCGCTGGACTCAACTTCC 3403291 Query 104516 AGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTT 104562 || ||||| ||||| || || || ||||| || || ||||||||||| Sbjct 3403290 AGCGTAATGGTCTTCCCCGTTAGGGTTTTGACGAAGATCTGCATTTT 3403244 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151395597064520