Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20sativus_20[refseq_20GCF_5F000004075.2_202014-10-27] 190 sequences; 195,669,205 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq2 127 2e-24 seq5 114 1e-20 seq1 104 2e-17 seq3 82.4 6e-11 >seq2 Length=23174626 Score = 127 bits (140), Expect = 2e-24 Identities = 168/233 (72%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 ||| || || | |||||| || | ||| || || ||||| || |||||||| || || Sbjct 15735207 ACCACCACGGAGCCTTAAGACAAGATGGAGCGTAGATTCCTTCTGGATGTTGTAGTCGGC 15735266 Query 48559 CAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618 | | ||| | |||||||||||||||||| || | || | ||||||||| || ||| Sbjct 15735267 AAGTGTTCGACCATCCTCCAGCTGCTTACCGGCGAAGATGAGACGCTGCTGGTCAGGCGG 15735326 Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGT 48678 | | |||||||||| ||| || ||||| | | |||||||| | | ||| Sbjct 15735327 TATTCCTTCCTTGTCCTGAATCTTTGCCTTGACATTATCGATGGTATCAGAACTCTCGAC 15735386 Query 48679 CTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATCGTGT 48731 ||||| |||||||| || ||||| || |||||||| || |||||||| |||| Sbjct 15735387 CTCGAGAGTTATGGTCTTCCCGGTAAGCGTTTTCACGAAGATCTGCATAGTGT 15735439 >seq5 Length=28023477 Score = 114 bits (126), Expect = 1e-20 Identities = 146/196 (74%), Gaps = 4/196 (2%) Strand=Plus/Minus Query 48536 TCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAA 48595 ||||| ||||||||||| || || | | ||| ||||||| |||||||| ||| || || Sbjct 21960157 TCCTTCTGAATGTTGTAGTCGGCTAGTGTTCGGCCGTCCTCAAGCTGCTTTCCGGCGAAA 21960098 Query 48596 ATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGAC 48655 || ||||||||||| ||| || | | |||||||||| || || ||||| | Sbjct 21960097 ATCAAACGCTGCTGGTCCGGAGGGATTCCTTCCTTGTCCTGGATCTTTGCCTTGACATTG 21960038 Query 48656 GCTATGGTATCGGTAGACTC-CGTC-TCGACTGTTATGGTTTTACCGGTGAGAGTTTTCA 48713 | |||||||||| || ||| || | |||| || ||||| ||||| || || ||||||| Sbjct 21960037 TCGATGGTATCGG-AG-CTCTCGACTTCGAGAGTGATGGTCTTACCCGTTAGGGTTTTCA 21959980 Query 48714 CAAAAATCTGCATCGT 48729 | || |||||||| || Sbjct 21959979 CGAAGATCTGCATGGT 21959964 >seq1 Length=29149675 Score = 104 bits (114), Expect = 2e-17 Identities = 147/204 (72%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCG-TCCTCCAGCTG 48582 ||||| ||| ||||||||||||||||||||| |||| ||| || ||||||||||| Sbjct 6810875 TGAAGGGTGGACTCCTTTTGAATGTTGTAATCCGCCAGA-GTCCTTCCATCCTCCAGCTG 6810933 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 ||| ||| | | || || | |||||| || || | | |||||||||| ||| || Sbjct 6810934 CTTTCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTCCTGAATCTT 6810993 Query 48643 CTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGT 48702 ||| | | || || || | |||||| ||| | || ||||| || ||||| Sbjct 6810994 GGCCTTCACGTTGTCAATTGTGTCTGAAGACTCAACCTCCAAGGTAATGGTCTTTCCGGT 6811053 Query 48703 GAGAGTTTTCACAAAAATCTGCAT 48726 ||||||||| |||||||| ||||| Sbjct 6811054 GAGAGTTTTGACAAAAATTTGCAT 6811077 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 48523 ATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTG 48582 |||||| ||| ||||| || ||||||||||| || | | ||| | || |||| ||| Sbjct 6811233 ATGAAGAGTGGATTCCTTCTGGATGTTGTAATCGGCAAGTGTTCGTCCATCTTCCAACTG 6811292 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 ||| ||| || | || | | ||||| || || | || |||||| ||| || || Sbjct 6811293 CTTTCCGGCGAAGATCAGTCTTTGCTGGTCTGGGGGAATACCTTCCTTATCCTGGATCTT 6811352 Query 48643 CTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGT 48702 ||||| | |||||||||| |||||| ||||| || || || || ||||| Sbjct 6811353 GGCCTTGACGTTATCAATGGTATCGGAGGACTCCACCTCGAGGGTGATAGTCTTTCCGGT 6811412 Query 48703 GAGAGTTTTCACAAAAATCTGCAT 48726 ||||| || ||||| || ||||| Sbjct 6811413 AAGAGTCTTGACAAAGATTTGCAT 6811436 >seq3 Length=39782674 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 48518 ACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCC 48577 || ||||| || || ||||| ||||| ||||| ||||| | ||| | ||||| Sbjct 19995848 ACCAAATGCAGAGTAGATTCCTTCTGAATATTGTAGTCAGCGAGAGTTCGACCATCCTCG 19995789 Query 48578 AGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATA 48637 ||||||||||| | |||| | | ||| || || || | || ||||||||| | Sbjct 19995788 AGCTGCTTACCAGCAAAAATAAGTCTCTGTTGGTCAGGTGGTATACCTTCCTTGTCTTGA 19995729 Query 48638 ATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTA 48697 ||||| ||||| | | |||||||| | | ||| ||| | || |||||||| Sbjct 19995728 ATTTTAGCCTTGACATTGTCAATGGTATCAGAACTTTCCACCTCAAGGGTAATGGTTTTG 19995669 Query 48698 CCGGTGAGAGTTTTCACAAAAATCTGCATC 48727 || || || || |||||||| || |||||| Sbjct 19995668 CCAGTAAGGGTCTTCACAAATATTTGCATC 19995639 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421250224540190