Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20sativus_20[refseq_20GCF_5F000004075.2_202014-10-27] 190 sequences; 195,669,205 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq3 118 6e-22 seq1 118 6e-22 seq5 116 2e-21 seq2 114 7e-21 seq7 113 2e-20 seq6 107 1e-18 >seq3 Length=39782674 Score = 118 bits (130), Expect = 6e-22 Identities = 89/104 (86%), Gaps = 1/104 (1%) Strand=Plus/Plus Query 11426 GGGAAATATAGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCT 11485 || ||||| | ||| ||||| ||| ||| ||||||||| | | |||||||| |||||| Sbjct 31447891 GGAAAATAAA-AATGAATAATAAAAAAAACTGGCCCATGCAGGTTTCGAACCTGCGACCT 31447949 Query 11486 TCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||||||||||||||||| ||||||||||||||| |||| Sbjct 31447950 TCGCGTTATTAGCACGACGCTCTAACCAACTGAGCTAATAGGCC 31447993 Score = 111 bits (122), Expect = 8e-20 Identities = 71/78 (91%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||||||||||||| | | |||||||| ||||||||||||||||||||||||||||| || Sbjct 28758045 AAATTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAAC 28757986 Query 11512 CAACTGAGCTAATGGGCC 11529 ||||||||||||| |||| Sbjct 28757985 CAACTGAGCTAATAGGCC 28757968 Score = 111 bits (122), Expect = 8e-20 Identities = 71/78 (91%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||||||||||||| | | |||||||| ||||||||||||||||||||||||||||| || Sbjct 31416668 AAATTGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAAC 31416727 Query 11512 CAACTGAGCTAATGGGCC 11529 ||||||||||||| |||| Sbjct 31416728 CAACTGAGCTAATAGGCC 31416745 Score = 107 bits (118), Expect = 1e-18 Identities = 69/76 (91%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 11454 ATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCA 11513 ||||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||| Sbjct 28602979 ATTGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCA 28603038 Query 11514 ACTGAGCTAATGGGCC 11529 ||||||||||| |||| Sbjct 28603039 ACTGAGCTAATAGGCC 28603054 Score = 104 bits (114), Expect = 1e-17 Identities = 67/74 (91%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 33723522 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 33723463 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 33723462 TGAGCTAATAGGCC 33723449 >seq1 Length=29149675 Score = 118 bits (130), Expect = 6e-22 Identities = 79/89 (89%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 ||| |||||| ||| ||||||||| | | |||||||| ||||||||||||||||||||| Sbjct 22151477 AATTAAAAATAAAAATGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCAC 22151536 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| ||||||||||||||| |||| Sbjct 22151537 GACGCTCTAACCAACTGAGCTAATAGGCC 22151565 Score = 109 bits (120), Expect = 3e-19 Identities = 75/85 (88%), Gaps = 3/85 (4%) Strand=Plus/Plus Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504 |||||| ||||||||||| | | |||||||| ||||||||||||||||||||||||| Sbjct 4133956 AAAAAT---ATTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACG 4134012 Query 11505 CTCTRACCAACTGAGCTAATGGGCC 11529 |||| ||||||||||||||| |||| Sbjct 4134013 CTCTAACCAACTGAGCTAATAGGCC 4134037 Score = 107 bits (118), Expect = 1e-18 Identities = 70/78 (90%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||||||||||||| | | |||||||| ||||||||||||||||||||||||||||| || Sbjct 1509039 AAATTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAAC 1508980 Query 11512 CAACTGAGCTAATGGGCC 11529 || |||||||||| |||| Sbjct 1508979 CAGCTGAGCTAATAGGCC 1508962 Score = 105 bits (116), Expect = 3e-18 Identities = 68/75 (91%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 |||||||||| | | |||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 1508875 TTGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAA 1508816 Query 11515 CTGAGCTAATGGGCC 11529 |||||||||| |||| Sbjct 1508815 CTGAGCTAATAGGCC 1508801 Score = 105 bits (116), Expect = 3e-18 Identities = 74/84 (88%), Gaps = 2/84 (2%) Strand=Plus/Minus Query 11446 AAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGC 11505 ||||| || ||||||||| | | |||||||| |||||||||||||||||||||||||| Sbjct 2704652 AAAATTAA--TGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGACGC 2704595 Query 11506 TCTRACCAACTGAGCTAATGGGCC 11529 ||| ||||||||||||||| |||| Sbjct 2704594 TCTAACCAACTGAGCTAATAGGCC 2704571 >seq5 Length=28023477 Score = 116 bits (128), Expect = 2e-21 Identities = 87/102 (85%), Gaps = 2/102 (2%) Strand=Plus/Minus Query 11430 AATATAGAATTA--ATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTC 11487 |||||| | ||| |||| ||| || |||||||||| | | |||||||| |||||||| Sbjct 959792 AATATAAATTTATTATAACAAAAAAATTTGGCCCATGCAGGTTTCGAACCTGCGACCTTC 959733 Query 11488 GCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||||||||||||||| ||||||||||||||| |||| Sbjct 959732 GCGTTATTAGCACGACGCTCTAACCAACTGAGCTAATAGGCC 959691 Score = 107 bits (118), Expect = 1e-18 Identities = 70/78 (90%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||| ||||||||| | | |||||||| ||||||||||||||||||||||||||||| || Sbjct 23055161 AAAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAAC 23055220 Query 11512 CAACTGAGCTAATGGGCC 11529 ||||||||||||| |||| Sbjct 23055221 CAACTGAGCTAATAGGCC 23055238 Score = 105 bits (116), Expect = 3e-18 Identities = 68/75 (91%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 |||||||||| | | |||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 961314 TTGGCCCATGCAGGTTTCGAACCTACGACCTTCGCGTTATTAGCACGACGCTCTAACCAA 961255 Query 11515 CTGAGCTAATGGGCC 11529 |||||||||| |||| Sbjct 961254 CTGAGCTAATAGGCC 961240 Score = 104 bits (114), Expect = 1e-17 Identities = 68/76 (89%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 11454 ATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCA 11513 ||||||||||| | | || ||||| ||||||||||||||||||||||||||||| |||| Sbjct 960476 ATTGGCCCATGCAGGTTTCAAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCA 960417 Query 11514 ACTGAGCTAATGGGCC 11529 ||||||||||| |||| Sbjct 960416 ACTGAGCTAATAGGCC 960401 Score = 104 bits (114), Expect = 1e-17 Identities = 67/74 (91%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 26734975 TGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 26735034 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 26735035 TGAGCTAATAGGCC 26735048 Score = 102 bits (112), Expect = 4e-17 Identities = 81/97 (84%), Gaps = 2/97 (2%) Strand=Plus/Minus Query 11430 AATATAGAATTAATAAAA--AATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTC 11487 |||||| | ||| || || ||| | |||||||||| | | || ||||| |||||||| Sbjct 959543 AATATAAATTTATTAGAACAAATAACTTTGGCCCATGCAGGTTTCAAACCTGCGACCTTC 959484 Query 11488 GCGTTATTAGCACGACGCTCTRACCAACTGAGCTAAT 11524 ||||||||||||||||||||| ||||||||||||||| Sbjct 959483 GCGTTATTAGCACGACGCTCTAACCAACTGAGCTAAT 959447 Score = 102 bits (112), Expect = 4e-17 Identities = 67/75 (89%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 |||||||||| | | |||||||| ||||||||||||||||||||||| ||||| ||||| Sbjct 960030 TTGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGATGCTCTAACCAA 959971 Query 11515 CTGAGCTAATGGGCC 11529 |||||||||| |||| Sbjct 959970 CTGAGCTAATAGGCC 959956 >seq2 Length=23174626 Score = 114 bits (126), Expect = 7e-21 Identities = 79/89 (89%), Gaps = 1/89 (1%) Strand=Plus/Minus Query 11442 ATAAAAAATCAAA-TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 |||||| | |||| |||||||||| | | |||||||| ||||||||||||||||||||| Sbjct 10993223 ATAAAATAACAAAATTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCAC 10993164 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| ||||||||||||||| |||| Sbjct 10993163 GACGCTCTAACCAACTGAGCTAATAGGCC 10993135 Score = 114 bits (126), Expect = 7e-21 Identities = 79/89 (89%), Gaps = 1/89 (1%) Strand=Plus/Plus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 ||| ||||| |||| ||||||||| | | |||||||| ||||||||||||||||||||| Sbjct 11014134 AATGAAAAA-CAAAATGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCAC 11014192 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| ||||||||||||||| |||| Sbjct 11014193 GACGCTCTAACCAACTGAGCTAATAGGCC 11014221 Score = 104 bits (114), Expect = 1e-17 Identities = 74/85 (87%), Gaps = 2/85 (2%) Strand=Plus/Plus Query 11447 AAATCAAA--TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504 |||| ||| |||||||||| | | |||||||| ||||||| ||||||||||||||||| Sbjct 11015414 AAATAAAAAGTTGGCCCATGCAGGTTTCGAACCTGCGACCTTTGCGTTATTAGCACGACG 11015473 Query 11505 CTCTRACCAACTGAGCTAATGGGCC 11529 |||| ||||||||||||||| |||| Sbjct 11015474 CTCTAACCAACTGAGCTAATAGGCC 11015498 >seq7 Length=19226500 Score = 113 bits (124), Expect = 2e-20 Identities = 76/85 (89%), Gaps = 2/85 (2%) Strand=Plus/Plus Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504 |||||| |||||||||||| | | |||||||| ||||||||||||||||||||||||| Sbjct 5127477 AAAAAT--AATTGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGACG 5127534 Query 11505 CTCTRACCAACTGAGCTAATGGGCC 11529 |||| ||||||||||||||| |||| Sbjct 5127535 CTCTAACCAACTGAGCTAATAGGCC 5127559 Score = 111 bits (122), Expect = 8e-20 Identities = 79/90 (88%), Gaps = 1/90 (1%) Strand=Plus/Minus Query 11441 AATAAAAAATCAAAT-TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCA 11499 |||| ||||| ||| ||||||||| | | |||||||| |||||||||||||||||||| Sbjct 5258214 AATATAAAATAAAAAATGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCA 5258155 Query 11500 CGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||| ||||||||||||||| |||| Sbjct 5258154 CGACGCTCTAACCAACTGAGCTAATAGGCC 5258125 Score = 109 bits (120), Expect = 3e-19 Identities = 79/91 (87%), Gaps = 1/91 (1%) Strand=Plus/Minus Query 11439 TTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGC 11498 |||| | |||| |||| |||||||| | | |||||||| ||||||||||||||||||| Sbjct 4543515 TTAAAATAAAAGTAAAT-GGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGC 4543457 Query 11499 ACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||| ||||||||||||||| |||| Sbjct 4543456 ACGACGCTCTAACCAACTGAGCTAATAGGCC 4543426 >seq6 Length=29076228 Score = 107 bits (118), Expect = 1e-18 Identities = 70/78 (90%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||| ||||||||| | | |||||||| ||||||||||||||||||||||||||||| || Sbjct 22535391 AAAGTGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAAC 22535450 Query 11512 CAACTGAGCTAATGGGCC 11529 ||||||||||||| |||| Sbjct 22535451 CAACTGAGCTAATAGGCC 22535468 Lambda K H 0.638 0.410 0.920 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261490594484440