Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20sativus_20[refseq_20GCF_5F000004075.2_202014-10-27] 190 sequences; 195,669,205 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq1 129 5e-25 seq5 118 1e-21 seq6 114 1e-20 seq2 114 1e-20 seq3 113 4e-20 >seq1 Length=29149675 Score = 129 bits (142), Expect = 5e-25 Identities = 167/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 94777 CACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATC 94836 || |||||| |||| || | || | ||| | || || |||||||| | ||| ||||| Sbjct 6810847 CATTCCTCCCCTCAGACGAAGAACAAGGTGAAGGGTGGACTCCTTTTGAATGTTGTAATC 6810906 Query 94837 GCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGG 94896 || ||| | |||||||||||| |||||| ||||||| || || ||||| ||||| Sbjct 6810907 CGCCAGAGTCCTTCCATCCTCCAGCTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCTGG 6810966 Query 94897 AGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTC 94956 ||||| ||||| ||||| | ||| || ||||| ||| | | | ||||| | || Sbjct 6810967 GGGAATGCCTTCCTTGTCCTGAATCTTGGCCTTCACGTTGTCAATTGTGTCTGAAGACTC 6811026 Query 94957 GACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || | || ||||| ||||| || |||||||| ||||| || ||||| Sbjct 6811027 AACCTCCAAGGTAATGGTCTTTCCGGTGAGAGTTTTGACAAAAATTTGCAT 6811077 Score = 122 bits (134), Expect = 8e-23 Identities = 157/212 (74%), Gaps = 5/212 (2%) Strand=Plus/Plus Query 94801 CAAG-TGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA--ATCCTC 94857 |||| || | ||| |||||||| || | ||| |||||| || |||||| | ||| || Sbjct 6811229 CAAGATGAAGAGTGGATTCCTTCTGGATGTTGTAATCGG-CA-AGTGTTCGTCCATCTTC 6811286 Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917 || ||| |||||| | ||||| | ||||||||| ||||| ||||||||||| || || | Sbjct 6811287 CAACTGCTTTCCGGCGAAGATCAGTCTTTGCTGGTCTGGGGGAATACCTTCCTTATCCTG 6811346 Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTT 94977 || || ||||||||| | | || || | | || || || | ||||| || || Sbjct 6811347 GATCTTGGCCTTGACGTTATCAATGGTATCGGAGGACTCCACCTCGAGGGTGATAGTCTT 6811406 Query 94978 TCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 ||| |||||||| || |||||||| ||||||| Sbjct 6811407 TCCGGTAAGAGTCTTGACAAAGATTTGCATGC 6811438 Score = 113 bits (124), Expect = 4e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 94811 GTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCG 94870 || || ||||| || | ||||||||| | || | ||| |||||||| |||||| Sbjct 6810653 GTCGACTCCTTCTGAATGTTATAATCAGCAAGGGTCCTTCCATCTTCCAGCTGCTTTCCG 6810712 Query 94871 CCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTG 94930 ||||||| ||||| ||||| ||||| ||||| || || ||||| | ||||||||| || Sbjct 6810713 GCAAAGATCAATCTCTGCTGGTCTGGTGGAATTCCCTCCTTGTCCTGAATTTTTGCTTTC 6810772 Query 94931 ACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTT 94990 || | ||| || |||| || || || | |||||||| ||||| || | || Sbjct 6810773 ACATTGTCGATTGTATCAGAACTCTCCACCTCCAAAGTGATGGTCTTTCCCGTCAAGGTC 6810832 Query 94991 TTCACAAAGATCTGCAT 95007 ||||| ||||||||||| Sbjct 6810833 TTCACGAAGATCTGCAT 6810849 Score = 105 bits (116), Expect = 6e-18 Identities = 154/214 (72%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA--TCC 94855 ||| | ||| | ||| |||||||| || | || |||||| || || ||| | ||| Sbjct 6811455 CACGAGGTGGAGAGTTGATTCCTTCTGGATATTGTAATCGG-CA-AGGGTTCGGCCGTCC 6811512 Query 94856 TCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCA 94915 || || || ||||| | ||||| |||| |||||| || || || || ||||| || || Sbjct 6811513 TCAAGTTGCTTTCCAGCGAAGATCAATCGTTGCTGGTCCGGGGGGATTCCTTCCTTATCC 6811572 Query 94916 TAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTT 94975 | || || || || ||| | | | |||||||| || || |||| ||||| || Sbjct 6811573 TGGATCTTGGCTTTAACGTTGTCAATAGTGTCAGAAGACTCCACCTCAAGGGTGATTGTC 6811632 Query 94976 TTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 ||||| ||||| ||||| |||||||||||||||| Sbjct 6811633 TTTCCGGTAAGGGTTTTTACAAAGATCTGCATGC 6811666 >seq5 Length=28023477 Score = 118 bits (130), Expect = 1e-21 Identities = 167/233 (72%), Gaps = 4/233 (2%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 |||||||| | || | ||| | ||| | || |||||||| || | ||| || ||| Sbjct 21960193 CCTCCTCTGAGACGGAGCACAAGGTGGAGCGTGGATTCCTTCTGAATGTTGTAGTCGGC- 21960135 Query 94841 ATAGTGTTGGAA--TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAG 94898 ||||||| | ||||| ||||| |||||| | || || || | ||||| || |||| Sbjct 21960134 -TAGTGTTCGGCCGTCCTCAAGCTGCTTTCCGGCGAAAATCAAACGCTGCTGGTCCGGAG 21960076 Query 94899 GAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGA 94958 | || ||||| ||||| | || ||||||||||| | ||| || || | | |||| Sbjct 21960075 GGATTCCTTCCTTGTCCTGGATCTTTGCCTTGACATTGTCGATGGTATCGGAGCTCTCGA 21960016 Query 94959 CGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGCTT 95011 | || | |||||||| || || || || |||||||| |||||||||||| || Sbjct 21960015 CTTCGAGAGTGATGGTCTTACCCGTTAGGGTTTTCACGAAGATCTGCATGGTT 21959963 >seq6 Length=29076228 Score = 114 bits (126), Expect = 1e-20 Identities = 152/211 (72%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858 |||| ||| | ||||| ||||| || | |||||| ||| || ||| | |||||| Sbjct 26767812 ACCAGGTGGAGGGTAGACTCCTTCTGGATGTTATAGTCGGCCAAAGTACGGCCATCCTCG 26767871 Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918 || || ||||| | ||||| | | || || ||||||||||| || |||||||| | Sbjct 26767872 AGTTGCTTTCCAGCGAAGATAAGACGCTGTTGGTCTGGAGGAATGCCCTCTTTGTCCTGG 26767931 Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978 || || ||||| ||| | ||| ||||||| || || |||| |||||||| || Sbjct 26767932 ATCTTGGCCTTTACGTTGTCGATGGTGTCAGACGACTCAACCTCAAGGGTGATGGTCTTG 26767991 Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 || || || |||||||| || |||||||||| Sbjct 26767992 CCCGTCAGGGTTTTCACGAAAATCTGCATGC 26768022 Score = 100 bits (110), Expect = 3e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 |||||||| | ||| | || || ||||| || | ||||||||| | || | Sbjct 26767578 CGCAACACAAGGTGGAGGGTGGACTCCTTCTGGATGTTATAATCAGCAAGGGTACGGCCG 26767637 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 ||||| || || || ||| ||||||| | |||||| || ||||| ||||| || || ||| Sbjct 26767638 TCCTCTAGTTGCTTACCGGCAAAGATGAGTCTTTGTTGGTCTGGGGGAATTCCCTCCTTG 26767697 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | || |||||||| ||| ||| || |||| | ||||| || | |||||| Sbjct 26767698 TCCTGGATCTTTGCCTTCACGTTATCGATGGTATCAGAGGATTCGACCTCGAGGGTGATG 26767757 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||| || || || || || || || || ||||| Sbjct 26767758 GTTTTACCCGTCAGGGTCTTAACGAAAATTTGCAT 26767792 Score = 87.8 bits (96), Expect = 2e-12 Identities = 103/136 (76%), Gaps = 4/136 (3%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 ||||| || | | ||| |||||||| | || || |||||||| | ||||||||| | Sbjct 9620090 CCTCCCCTAAGCCTCAAAACCAAGTGAAGGGTTGACTCCTTTTGAATGTTATAATCTG-C 9620148 Query 94841 ATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAG 94898 | || ||| || ||| |||| || || || |||| |||||||| ||||| || |||| Sbjct 9620149 A-AGCGTTCGACCATCTTCCAATTGCTTACCAGCAAAAATTAATCTCTGCTGGTCAGGAG 9620207 Query 94899 GAATACCTTCTTTGTC 94914 |||||||||| ||||| Sbjct 9620208 GAATACCTTCCTTGTC 9620223 >seq2 Length=23174626 Score = 114 bits (126), Expect = 1e-20 Identities = 147/199 (74%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 94811 GTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA--ATCCTCCAGCTGTTTTC 94868 ||||||||||| || | ||| || ||| || |||||| || |||||||||||| || | Sbjct 15735238 GTAGATTCCTTCTGGATGTTGTAGTCGG-CA-AGTGTTCGACCATCCTCCAGCTGCTTAC 15735295 Query 94869 CGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCT 94928 || | ||||| | | ||||| || || || || ||||| ||||| | ||| ||||||| Sbjct 15735296 CGGCGAAGATGAGACGCTGCTGGTCAGGCGGTATTCCTTCCTTGTCCTGAATCTTTGCCT 15735355 Query 94929 TGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAG 94988 |||| ||| || |||| ||||| || | || ||||| || || ||||| | Sbjct 15735356 TGACATTATCGATGGTATCAGAACTCTCGACCTCGAGAGTTATGGTCTTCCCGGTAAGCG 15735415 Query 94989 TTTTCACAAAGATCTGCAT 95007 ||||||| ||||||||||| Sbjct 15735416 TTTTCACGAAGATCTGCAT 15735434 >seq3 Length=39782674 Score = 113 bits (124), Expect = 4e-20 Identities = 154/212 (73%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATC-GCTCATAGTGTTGGA--ATCC 94855 ||||| |||| |||||||||||| || | || || || || || ||| || |||| Sbjct 19995848 ACCAAATGCAGAGTAGATTCCTTCTGAATATTGTAGTCAGC---GAGAGTTCGACCATCC 19995792 Query 94856 TCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCA 94915 || ||||| || || |||| || | ||| || || || || || |||||||| ||||| Sbjct 19995791 TCGAGCTGCTTACCAGCAAAAATAAGTCTCTGTTGGTCAGGTGGTATACCTTCCTTGTCT 19995732 Query 94916 TAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTT 94975 | |||||| |||||||| | | | || |||| || || |||| || |||||| Sbjct 19995731 TGAATTTTAGCCTTGACATTGTCAATGGTATCAGAACTTTCCACCTCAAGGGTAATGGTT 19995672 Query 94976 TTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || |||||||| || |||||||| || ||||| Sbjct 19995671 TTGCCAGTAAGGGTCTTCACAAATATTTGCAT 19995640 Score = 98.7 bits (108), Expect = 9e-16 Identities = 165/239 (69%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 94769 AAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACG 94828 ||| | | || ||| || | |||||| | ||| || ||||| || ||||||||||| | | Sbjct 19996106 AAAATCTGCATTCCACCGCGCAATCGGAGCACTAAATGCAACGTTGATTCCTTTTGAATG 19996047 Query 94829 TTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGC 94888 |||||||| || ||| || ||| || ||||| || || |||| || || || || Sbjct 19996046 TTATAATCTGCCAGAGTCCTGCCATCTTCAAGCTGCTTACCAGCAAAAATCAACCTCTGT 19995987 Query 94889 TGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCA 94948 || || || |||||||| || || || | || || || || || | | || ||| Sbjct 19995986 TGGTCCGGTGGAATACCCTCCTTATCTTGGATCTTAGCTTTCACATTATCAATTGTATCA 19995927 Query 94949 GCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | | || || || | || || ||||| || || | ||||||||||| || ||||| Sbjct 19995926 GAGCTCTCCACTTCCAAGGTAATTGTTTTCCCGGTTAAGGTTTTCACAAAAATTTGCAT 19995868 Score = 93.3 bits (102), Expect = 4e-14 Identities = 150/212 (71%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA--TCC 94855 |||||| || | ||||||||||| || | || |||||| || || ||| | ||| Sbjct 19995621 CACCAAATGGAGTGTAGATTCCTTCTGGATATTGTAATCGG-CA-AGCGTTCGGCCGTCC 19995564 Query 94856 TCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCA 94915 || || || || || ||||||| | || || || || || ||||| || ||||| || Sbjct 19995563 TCAAGTTGCTTACCAGCAAAGATAAGCCTCTGTTGGTCGGGTGGAATGCCCTCTTTATCT 19995504 Query 94916 TAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTT 94975 | |||||||||||| || | | | || |||| | || || || | ||||| ||| Sbjct 19995503 TGAATTTTTGCCTTTACATTGTCAATTGTATCAGAGCTTTCCACCTCGAGGGTGATTGTT 19995444 Query 94976 TTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || ||||| |||||||| || || || ||||| Sbjct 19995443 TTGCCAGTGAGAGTTTTTACGAATATTTGCAT 19995412 Score = 93.3 bits (102), Expect = 4e-14 Identities = 114/156 (73%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 |||||||| |||||||| ||||||| | ||| || |||||||||||||| || ||||| Sbjct 19996251 ATCCTCCAATTGTTTTCCAGCAAAGATCAGTCTCTGTTGATCTGGAGGAATCCCCTCTTT 19996192 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 ||| | ||| || ||||| || | | | ||||| | ||||| || | ||||| Sbjct 19996191 GTCTTGAATCTTCGCCTTCACATTGTCAATGGTGTCCGAACTTTCGACTTCCAATGTGAT 19996132 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || || || | || ||||| || |||||||| Sbjct 19996131 TGTCTTCCCTGTTAATGTCTTCACGAAAATCTGCAT 19996096 Score = 82.4 bits (90), Expect = 7e-11 Identities = 163/240 (68%), Gaps = 1/240 (0%) Strand=Plus/Plus Query 94769 AAAT-TTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCAC 94827 |||| ||| || |||||| | | ||||||| || | | | | |||||| |||| | Sbjct 4360791 AAATATTTGCATTCCTCCACGAAGACGCAACAACACGCGGAGATCTGATTCCGTTTGAAT 4360850 Query 94828 GTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTG 94887 |||||| ||| ||||| || ||| |||| || | || | || |||||||| || Sbjct 4360851 GTTATAGTCGGCTATAGTCTTACTATCTTCCAATTGCCTACCAGCTAAAATTAATCTCTG 4360910 Query 94888 CTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTC 94947 || | ||| || || || ||| | || | ||| || ||||| || ||| ||| || Sbjct 4360911 TTGGTATGGTGGGATGCCCTCTATATCTTGAATCTTAGCCTTTACATTTTCGATAGTATC 4360970 Query 94948 AGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || | || || |||| || | || |||| ||||||||||||||||| ||||| Sbjct 4360971 AGAATTTTCAACCTCAAGGGTTAGTGTCTTTCTGTGGAGAGTTTTCACAAAGATTTGCAT 4361030 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448290135308400