Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20sativus_20[refseq_20GCF_5F000004075.2_202014-10-27] 190 sequences; 195,669,205 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq6 168 1e-37 seq1 156 7e-34 >seq6 Length=29076228 Score = 168 bits (186), Expect = 1e-37 Identities = 199/267 (75%), Gaps = 2/267 (1%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTC-GAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || |||||||| |||| | |||| |||||||||| ||||| || || ||||| || || Sbjct 1507463 GCCAAGCGTCACCGCAAAG-TCTTGAGAGATAACATTCAAGGTATTACAAAGCCTGCAAT 1507521 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 || ||| ||||||||||||| || |||||||| || || ||| | |||||||| | Sbjct 1507522 TCGCCGTTTGGCTCGTCGTGGCGGTGTCAAGCGAATCAGCGGTTTGATTTATGAAGAAAC 1507581 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 | | |||||||||||||||||| ||| ||||||| ||||||| | || || || Sbjct 1507582 CAGAGGTGTTTTGAAGATCTTCCTTGAGAATGTTATCCGTGATGCTGTGACTTACACTGA 1507641 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||||| | ||||| || ||| |||||||| | || ||||| |||||| | || || Sbjct 1507642 GCACGCTAGGAGGAAGACGGTGACCGCCATGGATGTGGTTTATGCTTTGAAAAGGCAGGG 1507701 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTA 16698 | | | || ||||| ||| |||| Sbjct 1507702 AAGGACTTTGTACGGTTTCGGAGGTTA 1507728 Score = 161 bits (178), Expect = 2e-35 Identities = 181/242 (75%), Gaps = 0/242 (0%) Strand=Plus/Plus Query 16457 CGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGA 16516 ||||||||||| || || || || ||||| ||||| |||||| |||||||| | ||||| Sbjct 12551830 CGAGATAACATTCAGGGCATTACAAAGCCTGCTATTCGTCGTTTGGCTCGTAGAGGTGGT 12551889 Query 16517 GTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTC 16576 || |||||| || ||||||| |||||||||| | | | ||||||||||| ||||| Sbjct 12551890 GTGAAGCGTATCAGTGGATTGATCTATGAAGAAACCAGAGGGGTTTTGAAGATTTTCCTT 12551949 Query 16577 AAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACC 16636 ||| || || | ||||||| | ||| || |||||||| | | ||||| || || Sbjct 12551950 GAGAATGTGATTCGTGATGCTGTTACCTACACAGAGCACGCCAGGAGAAAGACGGTGACT 12552009 Query 16637 TCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGT 16696 |||||||| | || ||||| |||||| | || || | | | |||||||||||| || Sbjct 12552010 GCCATGGATGTGGTTTATGCTTTGAAAAGGCAGGGAAGAACCTTGTATGGTTTTGGAGGT 12552069 Query 16697 TA 16698 || Sbjct 12552070 TA 12552071 Score = 156 bits (172), Expect = 7e-34 Identities = 194/266 (73%), Gaps = 0/266 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 ||||||||||| | | | | |||||||||| || || || |||||||| || || Sbjct 12574492 GCTAAGCGTCACAGGAAGGTTTTAAGAGATAACATTCAGGGCATTACCAAGCCTGCCATT 12574551 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 |||||| |||||||| | ||||| || || ||| || ||||||| |||||||||| | Sbjct 12574552 CGTCGTTTGGCTCGTAGAGGTGGTGTGAAACGTATCAGTGGATTGATCTATGAAGAAACC 12574611 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 | | ||||||||||||||| || ||| || || | ||||||| | ||| || ||| Sbjct 12574612 AGAGGTGTTTTGAAGATCTTTCTTGAGAATGTGATTCGTGATGCTGTTACCTACACTGAG 12574671 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 || || | | ||||| || || | |||||| | || ||||| |||||| | ||||| Sbjct 12574672 CATGCAAGGAGGAAGACGGTGACTGCTATGGATGTGGTTTATGCTTTGAAAAGGCAAGGA 12574731 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTA 16698 | | | |||||||||||| |||| Sbjct 12574732 AGGACTTTGTATGGTTTTGGAGGTTA 12574757 Score = 154 bits (170), Expect = 2e-33 Identities = 180/243 (74%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 16457 CGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGA 16516 ||||||||||| || || || || ||||| || || |||||| |||||||| | ||||| Sbjct 12549260 CGAGATAACATTCAGGGCATTACAAAGCCTGCAATTCGTCGTTTGGCTCGTAGAGGTGGT 12549319 Query 16517 GTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTC 16576 || |||||| || ||||||| |||||||||| | | | ||||||||||| ||||| Sbjct 12549320 GTGAAGCGTATCAGTGGATTGATCTATGAAGAAACCAGAGGGGTTTTGAAGATTTTCCTT 12549379 Query 16577 AAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACC 16636 ||| || || | ||||||| | ||| || ||||| |||| | || || || || Sbjct 12549380 GAGAATGTGATTCGTGATGCTGTTACCTACACAGAGCATGCTAGGAGAAAAACGGTGACT 12549439 Query 16637 TCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGT 16696 |||||||| | || ||||| |||||| | || || | | | |||||||||||| || Sbjct 12549440 GCCATGGATGTGGTTTATGCTTTGAAAAGGCAGGGAAGGACCTTGTATGGTTTTGGAGGT 12549499 Query 16697 TAA 16699 ||| Sbjct 12549500 TAA 12549502 Score = 150 bits (166), Expect = 3e-32 Identities = 178/241 (74%), Gaps = 0/241 (0%) Strand=Plus/Plus Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517 |||| ||||| || || || || ||||| || ||||| ||| |||||||| | ||||| | Sbjct 12579979 GAGACAACATTCAGGGCATTACGAAGCCTGCAATCCGCCGTTTGGCTCGTAGAGGTGGTG 12580038 Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577 | |||||| || ||||||| |||||||||| | | | ||||||||||||||||| Sbjct 12580039 TGAAGCGTATCAGTGGATTGATCTATGAAGAAACCAGAGGGGTTTTGAAGATCTTCCTTG 12580098 Query 16578 AGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCT 16637 ||| ||||| | ||||||| | ||||| ||||| || | | ||||| || || Sbjct 12580099 AGAATGTTATTCGTGATGCTGTTACTTATACTGAGCATGCAAGGAGGAAGACGGTGACTG 12580158 Query 16638 CCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTT 16697 |||||||| | || ||||| |||||| | || || | | | ||||| |||||| ||| Sbjct 12580159 CCATGGATGTGGTTTATGCTTTGAAAAGGCAGGGGAGAACTCTATATGGCTTTGGAGGTT 12580218 Query 16698 A 16698 | Sbjct 12580219 A 12580219 Score = 147 bits (162), Expect = 3e-31 Identities = 177/241 (73%), Gaps = 0/241 (0%) Strand=Plus/Plus Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517 |||||||||| || || || |||||||| || || || ||| |||||||| | ||||| | Sbjct 12562655 GAGATAACATTCAGGGCATTACCAAGCCTGCCATTCGCCGTTTGGCTCGTAGAGGTGGTG 12562714 Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577 | |||||| || ||||||| |||||||||| | | | ||||||||||| ||||| Sbjct 12562715 TGAAGCGTATCAGTGGATTGATCTATGAAGAAACCAGAGGGGTTTTGAAGATTTTCCTTG 12562774 Query 16578 AGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCT 16637 ||| ||||| | ||||||| | || || ||||| || | | ||||| || || Sbjct 12562775 AGAATGTTATTCGTGATGCTGTTACTTACACTGAGCATGCAAGGAGGAAGACGGTGACTG 12562834 Query 16638 CCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTT 16697 | |||||| | || ||||| |||||| | || || | | | |||||||||||| ||| Sbjct 12562835 CTATGGATGTTGTTTATGCCTTGAAAAGGCAGGGAAGGACTTTGTATGGTTTTGGAGGTT 12562894 Query 16698 A 16698 | Sbjct 12562895 A 12562895 >seq1 Length=29149675 Score = 156 bits (172), Expect = 7e-34 Identities = 194/266 (73%), Gaps = 0/266 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||| | ||||| | | ||| | || ||||||||||||||||||||||| || ||| Sbjct 8049452 GCCAAGAGGCATCGGAAAGTTCTGAGGGACAACATCCAAGGAATCACCAAGCCGGCCATC 8049511 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || ||||| ||||| ||||| || || |||||| || || || |||||||||| | | Sbjct 8049512 CGCCGTCTTGCTCGCCGTGGGGGCGTAAAGCGTATCAGCGGCCTGATCTATGAAGAAACT 8049571 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | ||| | |||||||||||| | | || || | ||| ||| || || || ||| Sbjct 8049572 CGCGGCGTTCTCAAGATCTTCCTCGAAAATGTCATTCGTGACGCTGTCACTTACACTGAG 8049631 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 || ||| || |||||||||||| |||||||| | || || || | || | ||||| Sbjct 8049632 CATGCTCGCCGGAAGACTGTCACCGCCATGGATGTTGTGTACGCGCTCAAGAGGCAAGGA 8049691 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTA 16698 |||| | || || || ||| |||| Sbjct 8049692 CGTACTTTATACGGCTTCGGAGGTTA 8049717 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79075026281670