Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20sativus_20[refseq_20GCF_5F000004075.2_202014-10-27] 190 sequences; 195,669,205 total letters Query= NC_006820.1 Length=196280 Score E Sequences producing significant alignments: (Bits) Value seq190 643 1e-179 seq3 127 3e-24 seq1 114 2e-20 seq7 102 1e-16 >seq190 Length=155293 Score = 643 bits (712), Expect = 1e-179 Identities = 723/959 (75%), Gaps = 10/959 (1%) Strand=Plus/Minus Query 135374 TTCTGCGAGTGGGTTACCAGCACCGACAACCGCCTCTATGTGGGTTGGTTTGGAACGCTG 135433 ||||| | ||| | |||||||| || ||||| || || | || |||||||| || Sbjct 1244 TTCTGTAACTGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTG 1185 Query 135434 ATGATTCCTACTCTTCTCG-CAGCTGCTATCTGC-TTTATTGTTGCTTTCATCGCTGCAC 135491 ||||| ||||| ||| | | | || || |||| |||||| |||| ||||| ||||| | Sbjct 1184 ATGATCCCTAC-CTTATTGACCGCAACT-TCTGTATTTATTATTGCCTTCATTGCTGCTC 1127 Query 135492 CTCCCGTCGATATTGACGGCATCCGCGAACCTGTTGCTGGTTCTCTAATGTACGGAAATA 135551 |||| || |||||||| || || || ||||||||| |||| |||||| | |||||||| | Sbjct 1126 CTCCAGTGGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTACGGAAACA 1067 Query 135552 ACATCATCTCTGGTGCTGTTATCCCT---TCTAGCAACGCCATCGGCCTTCACTTCTATC 135608 | || || ||||||||| |||||||| ||| ||| || ||||| | ||||| || | Sbjct 1066 ATATTATTTCTGGTGCTATTATCCCTACCTCT-GCA--GCTATCGGTTTGCACTTTTACC 1010 Query 135609 CCATCTGGGAAGCTGCTTCTCTTGATGAGTGGCTATATAATGGTGGTCCTTATCAACTAG 135668 | || |||||||||||||| ||||||| ||| |||| || |||||||||||| | ||| Sbjct 1009 CAATTTGGGAAGCTGCTTCCGTTGATGAATGGTTATACAACGGTGGTCCTTATGAGCTAA 950 Query 135669 TGGTCTTCCACTTCCTTATCGGTGTCTTCTCTTACATGGGTCGCGAGTGGGAACTCTCTT 135728 | || | |||||| | | ||||| | |||||||||||| ||||||||||| || Sbjct 949 TTGTTCTACACTTCTTACTTGGTGTAGCATGTTACATGGGTCGAGAGTGGGAACTTAGTT 890 Query 135729 ACCGACTGGGTATGCGCCCTTGGATTTGTGTCGCTTACTCAGCCCCTGTTGCCGCTGCTA 135788 ||| ||||||||||| ||||||||| ||| || || ||||| |||||||| || |||| Sbjct 889 TCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCAGCTA 830 Query 135789 CTGCTGTTTTCCTGGTCTACCCCTTTGGACAAGGTTCTTTCAGTGATGGTATGCCGCTTG 135848 ||||||||||| || | ||||| |||| ||||| || ||| |||||||| || | Sbjct 829 CTGCTGTTTTCTTGATTTACCCAATTGGTCAAGGAAGCTTTTCTGACGGTATGCCTCTAG 770 Query 135849 GCATTTCTGGAACTTTTAACTACATGCTTGTTTTCCAGGCAGAACACAACATTCTCATGC 135908 | || ||||| ||||| |||| |||| |||| |||||||| || |||||||| || |||| Sbjct 769 GAATCTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGC 710 Query 135909 ATCCTTTCCACATGTTGGGAGTTGCTGGGGTCTTCGGTGGTTCTCTGTTCTCTGCTATGC 135968 | || ||||||||||| || || ||||| || ||||| || || || ||| |||||||| Sbjct 709 ACCCATTCCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGC 650 Query 135969 ATGGATCTCTTGTCACCTCTAGTCTTGTACGTGAGACGACTGAGGTAGAATCCCAGAACT 136028 |||| || | || || |||| | | | || || || || ||||| || Sbjct 649 ATGGTTCCTTGGTAACTTCTAAGTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATG 590 Query 136029 ATGGTTACAAGTTCGGTCAAGAAGAAGAGACTTACAACATTGTTGCTGCTCATGGTTACT 136088 | ||||||| ||||||||||| ||||| ||||| || || || |||||||||||||| | Sbjct 589 AAGGTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATT 530 Query 136089 TCGGTCGTCTGATCTTCCAATATGCGTCGTTCAACAACTCTCGTTCGCTACACTTTTTCC 136148 | || || |||||||||||||||| ||||||||||||||||| |||| || |||| Sbjct 529 TTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACATTTCTTCC 470 Query 136149 TTGCTGCTTGGCCTGTTGTCGGTATCTGGTTTGCTGCCCTGGGCGTATCTACGATGGCGT 136208 | |||||||||||||| || |||||||||| | || | || | || ||||| | Sbjct 469 TAGCTGCTTGGCCTGTAGTAGGTATCTGGTCCACCGCTTTAGGTATTAGCACTATGGCTT 410 Query 136209 TCAACCTCAATGGATTCAACTTCAACCAGTCCATTGTATCTTCTGAAGGTCGTGTACTCA 136268 ||||| | ||||| ||||| |||||||| || | || | | ||||||||||| | | Sbjct 409 TCAACTTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTA 350 Query 136269 ACACCTGGGCAGATGTGCTGAATCGTGCTGGTCTGGGTATGGAGGTGATGCACGAGCGT 136327 | |||||||| ||| | | || |||||| ||| |||||||| || ||||| || ||| Sbjct 349 ATACCTGGGCTGATATTATTAACCGTGCTAATCTTGGTATGGAAGTTATGCATGAACGT 291 Score = 596 bits (660), Expect = 2e-165 Identities = 747/1019 (73%), Gaps = 12/1019 (1%) Strand=Plus/Plus Query 137865 TTCGATGTCTTGGATGACTGGATTAAACGAGATCGCTTTGTATTTGTGGGTTGGTCTGGA 137924 |||||| | ||||||||||| | | || || || || ||||| |||||||| || Sbjct 34863 TTCGATATTATGGATGACTGGTTACGGAGGGACCGTTTCGTTTTTGTAGGTTGGTCCGGT 34922 Query 137925 CTACTACTTTTTCCCACTGCTTATTTGGCCCTTGGTGGCTGGCTTACTGGCACAACGTTT 137984 ||| | || ||||| ||| ||||| ||| | || || ||| |||| || ||||| ||| Sbjct 34923 CTATTGCTCTTTCCTTGTGCCTATTTTGCCGTCGGAGGTTGGTTTACAGGTACAACCTTT 34982 Query 137985 GTTACAAGCTGGTACACCCACGGGTTGGCGTCTAGTTATCTTGAAGGCGCTAATTTCCTC 138044 || || ||||| ||||| || ||||| | ||| | ||||| || ||| | Sbjct 34983 GTAACTTCATGGTATACCCATGGATTGGCAAGTTCCTATTTGGAAGGATGCAACTTCTTA 35042 Query 138045 ACAGCAGCTGTTTCGACTCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGT 138104 || || || ||||||||||||||| || | | | || ||| | | |||| ||||| Sbjct 35043 ACCGCCGCAGTTTCGACTCCTGCTAATAGTTTAGCCCACTCTTTGTTGTTACTATGGGGC 35102 Query 138105 CCTGAGTCTCAAGGAGATATCGTCCGCTGGTTCCAACTTGGGGGACTCTGGACTTTTGTG 138164 ||||| | ||||||||| | || |||| ||| | || || || ||||||||||| Sbjct 35103 CCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGTGGTCTGTGGACTTTTGTT 35162 Query 138165 GCGCTCCACGGGGCCTTTAGTCTGATTGGATTCATGCTTCGCCAGTTTGAGATCTCTCG- 138223 || |||||||| || || | || || || |||||| | || || ||||| | |||| Sbjct 35163 GCTCTCCACGGTGCTTTCGGACTAATAGGTTTCATGTTACGTCAATTTGAACTTGCTCGA 35222 Query 138224 TCTGGTAGGCA--TCCGTCCCTACAACGCAATCGCATTCTCTGGTCCCATCGCTGTGTTC 138281 |||| | || | || || || || |||||||||||||| || || || ||||| || Sbjct 35223 TCTGTT---CAATTGCGACCTTATAATGCAATCGCATTCTCGGGCCCAATTGCTGTTTTT 35279 Query 138282 GTCAGCGTGTTCCTGATGTATCCTTTGGGTCAATCCAGTTGGTTCTTTGCTCCCTCCTTT 138341 || || |||||||| ||||| | ||||| || ||||||||||||| || ||| Sbjct 35280 GTTTCTGTATTCCTGATTTATCCACTAGGTCAGTCTGGTTGGTTCTTTGCGCCTAGTTTT 35339 Query 138342 GGTGTGGCAGCAATCTTCCGAT---TCCTGTTGTTCCTTCAGGGTTTCCATAACTGGACC 138398 ||||| ||||| || || |||| |||| || |||| ||||||| ||||| ||||| Sbjct 35340 GGTGTAGCAGCTATATTTCGATTCATCCTATTTTTCC--AAGGGTTT-CATAATTGGACA 35396 Query 138399 CTCAACCCCTTTCATATGATGGGCGTAGCAGGTATTCTTGGTGGTGCTCTGCTCTGTGCT 138458 | ||||| |||||||||||||| || || || | | || | ||||||||| || ||| Sbjct 35397 TTGAACCCATTTCATATGATGGGAGTTGCGGGGGTATTGGGCGCTGCTCTGCTATGCGCT 35456 Query 138459 ATTCATGGTGCTACAGTAGAAAATACTTTGTATGAAGATGGCGAACAATCAAATACTTTT 138518 |||||||||||||| ||||||||||| || | ||| ||||| || ||||||| || Sbjct 35457 ATTCATGGTGCTACCGTAGAAAATACCTTATTTGAGGATGGGGATGGTGCAAATACATTC 35516 Query 138519 AAAGCATTTGAACCTACTCAAGAAGAAGAAACCTATTCAATGGTTACTGCTAACCGTTAC 138578 || ||| | || ||||||| |||||||| ||||||||||| ||||||||||| | Sbjct 35517 CGTGCTTTTAACCCAACTCAAGCTGAAGAAACTTATTCAATGGTCACTGCTAACCGCTTT 35576 Query 138579 TGGTCGCAAATCTTTGGAATTGCTTTTAGTAATAAGCGTTGGCTTCACTTCTTTATGCTC 138638 ||||| ||||||||||| |||||||| ||||| |||||| | || ||||||||| | Sbjct 35577 TGGTCCCAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTA 35636 Query 138639 TTTGTTCCCGTCATGGGTCTCTGGACTAGTAGTATTGGTATTATTGGTCTTGCTCTTAAC 138698 ||||| || || | ||| | |||| ||| | |||| | ||||||| || || ||| Sbjct 35637 TTTGTACCAGTAACTGGTTTATGGATGAGTGCTCTTGGAGTAGTTGGTCTGGCCCTGAAC 35696 Query 138699 CTACGAGCGTATGATTTCGTATCGCAAGAAATTCGTGCAGCAGAAGATCCTGAATTCGAG 138758 ||||| || ||||| ||||| || || ||||| |||||||| |||||||| ||||| ||| Sbjct 35697 CTACGTGCCTATGACTTCGTTTCTCAGGAAATCCGTGCAGCGGAAGATCCGGAATTTGAG 35756 Query 138759 ACCTTCTACACCAAGAACATTCTTCTGAATGAAGGTCTGCGTGCCTGGATGGCTCCTGTG 138818 || ||||| ||||| || ||||| | || |||||| | ||||| |||||||| || Sbjct 35757 ACTTTCTATACCAAAAATATTCTCTTAAACGAAGGTATTCGTGCTTGGATGGCGGCTCAA 35816 Query 138819 GATCAACCTCACGAAAACTTTGTTTTTCCTGAAGAAGTATTGCCAAGAGGCAACGCTCT 138877 ||||| ||||| |||||| || | || ||||| || || | || | || |||||||| Sbjct 35817 GATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCCCGTGGAAACGCTCT 35875 >seq3 Length=39782674 Score = 127 bits (140), Expect = 3e-24 Identities = 142/187 (76%), Gaps = 6/187 (3%) Strand=Plus/Plus Query 138319 GTTGGTTCTTTGCTCCCTCCTTTGGTGTGGCAGCAATCTTCCGAT---TCCTGTTGTTCC 138375 ||||||||||||| || |||||||| ||||| || || |||| |||| | |||| Sbjct 23202873 GTTGGTTCTTTGCGCCTAGTTTTGGTGTAGCAGCTATATTTCGATTCATCCTACTTTTCC 23202932 Query 138376 TTCAGGGTTTCCATAACTGGACCCTCAACCCCTTTCATATGATGGGCGTAGCAGGTATTC 138435 ||||||| ||||| ||||| | ||||| |||||||||||||| || || || | Sbjct 23202933 --AAGGGTTT-CATAATTGGACATTGAACCCATTTCATATGATGGGAGTTGCGGGGGTGT 23202989 Query 138436 TTGGTGGTGCTCTGCTCTGTGCTATTCATGGTGCTACAGTAGAAAATACTTTGTATGAAG 138495 | || | |||| |||| || |||||||| |||||||| ||||||||||| || ||| | Sbjct 23202990 TGGGCGTTGCTTTGCTATGCGCTATTCAGGGTGCTACTGTAGAAAATACCTTACTTGAGG 23203049 Query 138496 ATGGCGA 138502 |||| || Sbjct 23203050 ATGGGGA 23203056 >seq1 Length=29149675 Score = 114 bits (126), Expect = 2e-20 Identities = 135/180 (75%), Gaps = 6/180 (3%) Strand=Plus/Plus Query 136151 GCTGCTTGGCCTGTTGTCGGTATCTGGTTTGCTGCCCTGGGCGTATCTA---CGATGGCG 136207 |||||||||||||| || ||||||||||| | || ||| |||| || | ||||| Sbjct 9383827 GCTGCTTGGCCTGTAGTAGGTATCTGGTTCACCGCTTTGG--GTAT-TAGCCCTATGGCT 9383883 Query 136208 TTCAACCTCAATGGATTCAACTTCAACCAGTCCATTGTATCTTCTGAAGGTCGTGTACTC 136267 |||||| | ||||| ||||| |||||||| || | || | | ||||||||||| | Sbjct 9383884 TTCAACTTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATT 9383943 Query 136268 AACACCTGGGCAGATGTGCTGAATCGTGCTGGTCTGGGTATGGAGGTGATGCACGAGCGT 136327 || |||||||| ||| | | || |||||| ||| |||||||| || ||||| || ||| Sbjct 9383944 AATACCTGGGCTGATATTATTAACCGTGCTAATCTTGGTATGGAAGTTATGCATGAACGT 9384003 >seq7 Length=19226500 Score = 102 bits (112), Expect = 1e-16 Identities = 221/328 (67%), Gaps = 2/328 (1%) Strand=Plus/Minus Query 138477 GAAAATACTTTGTATGAAGATGGCGAACAATCAAATACTTTTAAAGCATTTGAACCTACT 138536 |||||||| || | ||| | ||| | ||||||| ||| | | ||| | || ||| Sbjct 11585946 GAAAATACCTTATTTGAGGTTGGATATGGTGCAAATACATTTTATGATTTTAACCCAACT 11585887 Query 138537 CAAGAAGAA-GAAACCT-ATTCAATGGTTACTGCTAACCGTTACTGGTCGCAAATCTTTG 138594 | || || ||||| | |||||||| |||||||||| |||| ||||| |||||||||| Sbjct 11585886 CCAGCTTAAAGAAACTTTATTCAATGATTACTGCTAATCGTTTTTGGTCCCAAATCTTTG 11585827 Query 138595 GAATTGCTTTTAGTAATAAGCGTTGGCTTCACTTCTTTATGCTCTTTGTTCCCGTCATGG 138654 || || || | | ||| | || | | || | ||| | ||| | | || | Sbjct 11585826 GAGTTATTTCTTCCATTAAACATTTATTAAATTTTTGCATGTTATTTATAACAGTAACTA 11585767 Query 138655 GTCTCTGGACTAGTAGTATTGGTATTATTGGTCTTGCTCTTAACCTACGAGCGTATGATT 138714 || | |||| ||| | |||| | || || | || || |||||| | | || | | Sbjct 11585766 GTTTGTGGATGAGTGCTCTTGGAGTAGTTTGTTTGGCCCTAAACCTATGTACCCATAACT 11585707 Query 138715 TCGTATCGCAAGAAATTCGTGCAGCAGAAGATCCTGAATTCGAGACCTTCTACACCAAGA 138774 || | || || ||||||||||| ||||||| |||||| ||||| || || ||||| | Sbjct 11585706 TCCTTTCTCAGAAAATTCGTGCAAGGGAAGATCTTGAATTTGAGACTTTTTAGACCAAAA 11585647 Query 138775 ACATTCTTCTGAATGAAGGTCTGCGTGC 138802 | ||||| | || ||||| | | ||| Sbjct 11585646 ATATTCTCTTAAACAAAGGTATTCATGC 11585619 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627966508576000