Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20sativus_20[refseq_20GCF_5F000004075.2_202014-10-27] 190 sequences; 195,669,205 total letters Query= NC_006883.2 Length=252401 Score E Sequences producing significant alignments: (Bits) Value seq190 545 4e-150 seq1 156 7e-33 seq4 136 6e-27 seq2 120 5e-22 seq7 89.7 8e-13 >seq190 Length=155293 Score = 545 bits (604), Expect = 4e-150 Identities = 689/944 (73%), Gaps = 2/944 (0%) Strand=Plus/Minus Query 211610 TTGGTTGGTTTGGTGTTCTTATGATCCCATGTCTTCTAG-CTGCAACAACATGCTTTATC 211668 |||| |||||||||||| | |||||||| | ||| | | | ||||| | ||||| Sbjct 1204 TTGGATGGTTTGGTGTTTTGATGATCCC-TACCTTATTGACCGCAACTTCTGTATTTATT 1146 Query 211669 GTAGCATTCATCGCAGCACCTCCCGTTGATATCGACGGAATCCGTGAACCAGTAGCTGGT 211728 | || ||||| || || ||||| || ||||| || || || |||||||| || |||| Sbjct 1145 ATTGCCTTCATTGCTGCTCCTCCAGTGGATATTGATGGTATTCGTGAACCTGTTTCTGGA 1086 Query 211729 TCATTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCTTCAAACGCAATC 211788 || | | || || ||||| || || |||||||| || | || | || || ||| Sbjct 1085 TCTCTACTTTACGGAAACAATATTATTTCTGGTGCTATTATCCCTACCTCTGCAGCTATC 1026 Query 211789 GGTTTACACTTCTATCCTATCTGGGAAGCAGCAACTCTTGATGAGTGGCTCTACAATGGT 211848 ||||| ||||| || || || |||||||| || | ||||||| ||| | ||||| ||| Sbjct 1025 GGTTTGCACTTTTACCCAATTTGGGAAGCTGCTTCCGTTGATGAATGGTTATACAACGGT 966 Query 211849 GGTCCTTACCAGTTGGTAATCTTCCACTTCCTTATCGGAATCTCAGCATACATGGGAAGA 211908 |||||||| || | | | | |||||| | | || | || |||||||| || Sbjct 965 GGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCATGTTACATGGGTCGA 906 Query 211909 CAGTGGGAACTTTCATACCGTTTAGGTATGCGTCCTTGGATCTGTGTTGCTTATTCAGCA 211968 ||||||||||| | |||| | ||||||||||||||||| |||||| |||||||| Sbjct 905 GAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCT 846 Query 211969 CCTGTATCAGCAGCTTTCGCTGTATTCCTTGTTTACCCATTCGGTCAGGGTTCATTCTCA 212028 ||||| |||||||| ||||| ||| | |||||||| | ||||| || || || Sbjct 845 CCTGTTGCAGCAGCTACTGCTGTTTTCTTGATTTACCCAATTGGTCAAGGAAGCTTTTCT 786 Query 212029 GACGGTATGCCTTTAGGTATATCAGGAACATTCAACTTCATGTTCGTATTCCAAGCAGAA 212088 |||||||||||| |||| || || || || |||||||||||| | |||||||| || || Sbjct 785 GACGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAG 726 Query 212089 CATAACATCCTTATGCACCCATTCCATATGGCAGGTGTTGCAGGTATGTTCGGTGGAGCA 212148 || ||||||||||||||||||||||| ||| |||||| || ||| | ||||| || | Sbjct 725 CACAACATCCTTATGCACCCATTCCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCC 666 Query 212149 TTATTCTCTGCTATGCACGGTTCTCTTGTTACATCTTCACTTATCCGTGAAACCACTGGT 212208 ||||| ||||||||| ||||| | || || ||| | ||| | |||||||| | Sbjct 665 CTATTCAGTGCTATGCATGGTTCCTTGGTAACTTCTAAGTTGATCAGGGAAACCACAGAA 606 Query 212209 TTAGATTCACAGAACTATGGTTACAAGTTCGGACAAGAAGAAGAGACATATAACATCGTT 212268 || || || | ||||||| ||||| ||||| ||||| || ||||| ||||| Sbjct 605 AATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTA 546 Query 212269 GCTGCACATGGATACTTCGGTAGACTTATCTTCCAGTATGCATCATTCAACAACAGCAGA 212328 ||||| ||||| || || || || | |||||||| ||||| ||||||||| | Sbjct 545 GCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGT 486 Query 212329 AGTTTACACTTCTTCCTCGCATCATGGCCTGTTATCTGTGTATGGTTAACCTCTATGGGT 212388 |||||| |||||||| || | |||||||| | || | |||| ||| || | ||| Sbjct 485 TCTTTACATTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATCTGGTCCACCGCTTTAGGT 426 Query 212389 ATCTGCACAATGGCATTCAACCTAAATGGATTCAACTTCAACCAATCAGTTGTTGATGCA 212448 || |||| ||||| |||||| ||||||| ||||| ||||||||||| || |||||| Sbjct 425 ATTAGCACTATGGCTTTCAACTTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGT 366 Query 212449 TCAGGTAAGGTTGTTCCTACTTGGGGTGATGTTCTTAACAGAGCAAACCTTGGTATGGAA 212508 |||| || || ||| |||| |||| || ||||| | || || |||||||||||| Sbjct 365 CAAGGTCGTGTAATTAATACCTGGGCTGATATTATTAACCGTGCTAATCTTGGTATGGAA 306 Query 212509 GTTATGCACGAAAGAAATGCACACAACTTCCCACTTGACTTAGC 212552 |||||||| ||| | ||||| ||||||||||| || ||| |||| Sbjct 305 GTTATGCATGAACGTAATGCTCACAACTTCCCTCTAGACCTAGC 262 >seq1 Length=29149675 Score = 156 bits (172), Expect = 7e-33 Identities = 160/209 (77%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 212353 TGGCCTGTTATCTGTGTATGGTTAACCTCTATGGGTATCTGCACAATGGCATTCAACCTA 212412 |||||||| | || | ||||| ||| || ||||||| || | ||||| |||||| || Sbjct 9383833 TGGCCTGTAGTAGGTATCTGGTTCACCGCTTTGGGTATTAGCCCTATGGCTTTCAACTTA 9383892 Query 212413 AATGGATTCAACTTCAACCAATCAGTTGTTGATGCATCAGGTAAGGTTGTTCCTACTTGG 212472 ||||| ||||| ||||||||||| || |||||| |||| || || ||| ||| Sbjct 9383893 AATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATACCTGG 9383952 Query 212473 GGTGATGTTCTTAACAGAGCAAACCTTGGTATGGAAGTTATGCACGAAAGAAATGCACAC 212532 | |||| || ||||| | || || |||||||||||||||||||| ||| | ||||| ||| Sbjct 9383953 GCTGATATTATTAACCGTGCTAATCTTGGTATGGAAGTTATGCATGAACGTAATGCTCAC 9384012 Query 212533 AACTTCCCACTTGACTTAGCATCTGCTAA 212561 |||||||| || ||| |||| ||| ||| Sbjct 9384013 AACTTCCCTCTAGACCTAGCTGCTGTTAA 9384041 >seq4 Length=23425844 Score = 136 bits (150), Expect = 6e-27 Identities = 497/769 (65%), Gaps = 58/769 (8%) Strand=Plus/Plus Query 193437 GCATTAATAACAGGCATAACTGGGCAGGATGGATCTTATCTTGCCGAGTTTCTTTTGTCT 193496 || ||||| || ||||| ||||| |||||||| || || ||| | ||||| ||| | | Sbjct 3678783 GCCTTAATTACTGGCATTACTGGTCAGGATGGTTCCTACCTTACTGAGTTCCTTCTCGAT 3678842 Query 193497 AAGGGATATGAAGTTCATGGTATTG-TAAGGAGAAGTTCCCTAATCAATACTCATAGAAT 193555 ||||| |||||||| ||||| |||| | ||||| |||| |||||||||| |||| Sbjct 3678843 AAGGGCTATGAAGTCCATGG-ATTGATTCGGAGATCTTCCAACTTCAATACTCAACGAAT 3678901 Query 193556 TGATCATATCTATG------------------AGAAG------ATCACTCTTCATTATGG 193591 | || |||||| | ||| || | ||||| |||| Sbjct 3678902 CAACCACATCTATATCGATCCTCACAATGCTAATAAGGCACGAATGAAGCTTCACTATGC 3678961 Query 193592 AGATCTAACTGA----TCCTGTAAATGTT-ATGGGT-GTCATTAGGGCAGTTGAACCTGC 193645 || || ||||| |||| | || |||| | | |||| || |||| Sbjct 3678962 TGACCTTACTGACGCCTCCTCTCTCCGTCGATGGCTTGATATTA------TTCTTCCTGA 3679015 Query 193646 TGAGATCTATAATCTTGGTGCTCAAAGTCATGTTAAAGTTTCCTTTGAGATGCCAGAGTA 193705 |||| | ||||| || | |||||| ||||||| ||||| || || || || || || Sbjct 3679016 TGAGGTTTATAACCTCGCAGCTCAATCTCATGTTGCTGTTTCTTTCGAAATTCCGGATTA 3679075 Query 193706 TACTTCTAATGTTGATGCTTTAGGAACTCTTAGAATACTTGAAGCAGTTCG------TAT 193759 |||| || |||||| ||| || |||| | | ||||| || ||||| ||| Sbjct 3679076 TACTGCTGATGTTGTTGCCACTGGTGCTCTACGTTTGCTTGAGGCTGTTCGATCTCATAT 3679135 Query 193760 -GTTGGGAATGGAGAAAG--ATGTTCGCATCTATCAGGC---ATCTACCAGCGAACTGTA 193813 | || | ||| || | |||| || || || ||| | ||| ||| Sbjct 3679136 CGCTGCTACTGGTCGTAGCCACATTCGATATTACCAAGCGGGATCGTCT---GAAATGTT 3679192 Query 193814 TGGTGGTGTTCTAGGCACTCCACTATCAGAAACCACACCATTTCATCCACGCTCTCCTTA 193873 ||| || | | || |||| | || || || || ||||||||||| || |||||||| Sbjct 3679193 TGG--GTCTACGCCGC-CTCCTCAGTCGGAGACGACTCCATTTCATCCTCGATCTCCTTA 3679249 Query 193874 TGGTGTAGCAAAGTTGTATGGTTATTGGATCATCAAGAATTATCGTGAGTCATATGGATT 193933 || || ||| || | || ||||| | ||||| |||||| | || || | Sbjct 3679250 TGCTGCAGCGAAATGCGCTGCGCATTGGTATACTGTTAATTACCGTGAGGCCTACGGGAT 3679309 Query 193934 CCACGCTAGTTCTGGTATTCTCTTCAATCACGAATCTCCAAGAAGAGGTGAGACATTTGT 193993 |||| || ||| || || ||||| || ||||| || | || || |||| || || Sbjct 3679310 TTTCGCTTGTAATGGGATACTATTCAACCATGAATCGCCTCGCAGGGGAGAGAATTTCGT 3679369 Query 193994 AACTCGTAAGATTACACAAGGTTTATCTAAGATCTCTGTTGGATTACAGAAGATTCTTTA 194053 || | ||||| |||| || | || | |||| ||||| | |||| | || | Sbjct 3679370 GACGAGGAAGATCACACGAGCTGTAGGTCGGATCAAGATTGGACTGCAGAGCAAGCTGT- 3679428 Query 194054 TCTTGGT-AATCTTAATGCTAAGAGGGATTGGGGACACGCAAAGGATTATGTTGAAGCGA 194112 |||||| ||||| | || |||||||||||| ||| ||||||||| ||||||| Sbjct 3679429 TCTTGGGGAATCTGCAGGCGTCGAGGGATTGGGGTTTTGCAGGGGATTATGTGGAAGCGA 3679488 Query 194113 TGTGGTTAATGTTGCAACAGGATGAACCCGATGATTATGTGATTGCTAC 194161 ||||| | ||| |||| || ||| |||| |||||||| ||| |||| || Sbjct 3679489 TGTGGATGATGCTGCAGCAAGATCAACCTGATGATTACGTGGTTGCGAC 3679537 >seq2 Length=23174626 Score = 120 bits (132), Expect = 5e-22 Identities = 234/342 (68%), Gaps = 8/342 (2%) Strand=Plus/Plus Query 194602 CTTGCTGCTGCTAAGGTAGGTGGTATAGGTGGTAACTCTACCTATCCTGCCGATTTCATC 194661 || || || || || || ||||| || | |||| |||||||| || ||||||||| Sbjct 3787756 CTCGCCGCCGCGAAAGTTGGTGGAATTCACGCTAACAACACCTATCCAGCGGATTTCATC 3787815 Query 194662 TATGACAATCTGATGATTCAGACAAATGTTATTGATGCTGCATATCGTAATGGAGTTAAG 194721 || || || || || ||||| || ||| | || || || |||| ||| || Sbjct 3787816 GCCATTAACCTTCAAATCCAAACTAATGTCATCGATTCAGCCTACCGCTATGGCGTTGAG 3787875 Query 194722 AAACTATTGTTTCTAGGTTCATCTTGCATCTATCCTAAGTT---TCCAAAGATACCTATT 194778 || ||| | ||||| |||||||| || || |||||||| || |||| | ||| ||| Sbjct 3787876 AAGCTACTATTTCTCGGTTCATCATGTATTTATCCTAAATTCGCTCCACA---ACCGATT 3787932 Query 194779 ACAGAGGATCAGTTACTTGCTAGTCCTTTGGAAGAATCTAAT-AGTGCTTATGCAATTGC 194837 | || || ||||| | ||||| |||| | || |||| | | || | || Sbjct 3787933 CCTGAAGACGCATTACTAACCGGTCCTCTGGAGCCGACAAACGAGTGGT-ACGCGGTGGC 3787991 Query 194838 AAAGATAGCAGGTATGAGGATGTGTCAAGCATATCGTCAGCAGTATGGATTTAATGCAAT 194897 ||||| || || || | ||||||||||||||||| || || || ||||||| Sbjct 3787992 GAAGATCGCCGGAATCAAAATGTGTCAAGCATATCGAATTCAATACAAATGGGATGCAAT 3788051 Query 194898 ATCATTAATGCCTACTAATCTATACGGACCTAATGATAATTT 194939 ||| |||||| |||||||||||||| || || |||||||| Sbjct 3788052 TTCAGGAATGCCGACTAATCTATACGGTCCAAACGATAATTT 3788093 >seq7 Length=19226500 Score = 89.7 bits (98), Expect = 8e-13 Identities = 72/87 (83%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 212466 TACTTGGGGTGATGTTCTTAACAGAGCAAACCTTGGTATGGAAGTTATGCACGAAAGAAA 212525 ||| |||| |||| || ||||| | || || |||||||||||||||||||| ||| | || Sbjct 19048890 TACCTGGGCTGATATTATTAACCGTGCTAATCTTGGTATGGAAGTTATGCATGAACGTAA 19048949 Query 212526 TGCACACAACTTCCCACTTGACTTAGC 212552 ||| ||||||||||| || ||| |||| Sbjct 19048950 TGCTCACAACTTCCCTCTAGACCTAGC 19048976 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 807553282056400