Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20sativus_20[refseq_20GCF_5F000004075.2_202014-10-27] 190 sequences; 195,669,205 total letters Query= NC_006884.2 Length=178249 Score E Sequences producing significant alignments: (Bits) Value seq190 536 1e-147 seq1 127 2e-24 seq7 93.3 5e-14 seq5 93.3 5e-14 >seq190 Length=155293 Score = 536 bits (594), Expect = 1e-147 Identities = 720/997 (72%), Gaps = 10/997 (1%) Strand=Plus/Minus Query 170666 TTTTGTGAGTGGGTAACATCCACTGACAATCGCATCTACGTTGGTTGGTTTGGTGTCTTA 170725 || ||| | ||| |||| |||||| || || | ||| |||| ||||||||||| || Sbjct 1244 TTCTGTAACTGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTG 1185 Query 170726 ATGATCCCATGTCTTCTA-ACTGCTGCTGCTTGTTTCATTGTAGCATTCATCGCTGCTCC 170784 |||||||| | ||| | || || || || || ||| | || ||||| |||||||| Sbjct 1184 ATGATCCC-TACCTTATTGACCGCAACTTCTGTATTTATTATTGCCTTCATTGCTGCTCC 1126 Query 170785 TCCAGTCGATATCGACGGAATCAGAGAACCAGTTGCGGGTTCTTTCTTATATGGTAACAA 170844 |||||| ||||| || || || | ||||| ||| | || ||| | | || || ||||| Sbjct 1125 TCCAGTGGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTACGGAAACAA 1066 Query 170845 CATCATCTCTGGTGCTGTAGTTCCATCTTCAAACGCAATAGGATTACACTTCTATCCCAT 170904 || || ||||||||| | | || | || || || || || ||||| || || || Sbjct 1065 TATTATTTCTGGTGCTATTATCCCTACCTCTGCAGCTATCGGTTTGCACTTTTACCCAAT 1006 Query 170905 CTGGGAAGCAGCCACTATGGACGAGTGGTTGTACAACGGAGGTCCTTACCAGTTAGTTAT 170964 |||||||| || | | || || ||||| |||||||| |||||||| || || || | Sbjct 1005 TTGGGAAGCTGCTTCCGTTGATGAATGGTTATACAACGGTGGTCCTTATGAGCTAATTGT 946 Query 170965 TTTCCACTTCCTTATTGGAATCTCTGCCTACATGGGTAGACAGTGGGAACTATCATACAG 171024 | | |||||| | |||| | | ||||||||| || |||||||||| | | | Sbjct 945 TCTACACTTCTTACTTGGTGTAGCATGTTACATGGGTCGAGAGTGGGAACTTAGTTTCCG 886 Query 171025 ACTAGGAATGAGACCTTGGATATGTGTAGCATACTCAGCACCTGTATCTGCAGCATTTGC 171084 || || ||| | |||||||| ||| ||||| ||||| ||||| | ||||| ||| Sbjct 885 TCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCAGCTACTGC 826 Query 171085 AGTATTCCTTGTGTATCCATTCGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGGTAT 171144 || ||| | | || ||| | ||||| || || ||||| |||||||| ||||| || Sbjct 825 TGTTTTCTTGATTTACCCAATTGGTCAAGGAAGCTTTTCTGACGGTATGCCTCTAGGAAT 766 Query 171145 CTCAGGTACGTTCAACTTCATGTTCGTGTTCCAAGCAGAACACAACATACTAATGCACCC 171204 ||| ||||| |||||||||||| | || ||||| || || |||||||| || |||||||| Sbjct 765 CTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCC 706 Query 171205 CTTCCATATGGCAGGTGTAGCAGGTATGTTCGGTGGTAGTCTCTTCAGTGCAATGCACGG 171264 ||||| ||| ||||||||| ||| | ||||| || || |||||||| ||||| || Sbjct 705 ATTCCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGG 646 Query 171265 TTCTCTAGTGACATCTTCTCTAATCAGAGAGACAACTGAGAACGAGAGTCAAAACTACGG 171324 ||| | || || ||| | ||||| || || || || || || | || | || Sbjct 645 TTCCTTGGTAACTTCTAAGTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGG 586 Query 171325 CTATAAGTTCGGACAAGAAGAAGAAACATATAACATTGTTGCTGCTCATGGATACTTCGG 171384 || | ||||| ||||| |||||||| ||||| || || ||||||||||| || || || Sbjct 585 TTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTTGG 526 Query 171385 TAGATTAATCTTCCAGTATGCATCATTCAACAACTCTCGTTCATTACACTTCTTCCTCGC 171444 |||| |||||||| ||||| ||||||||||||||||| ||||| |||||||| || Sbjct 525 CCGATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACATTTCTTCCTAGC 466 Query 171445 TGTATTCCCTGTAGTCTGTGTATGGTTAACCTCTATGGGTATCTGTACAATGGCATTCAA 171504 || | |||||||| || | |||| ||| || | ||||| | || ||||| ||||| Sbjct 465 TGCTTGGCCTGTAGTAGGTATCTGGTCCACCGCTTTAGGTATTAGCACTATGGCTTTCAA 406 Query 171505 CCTTAACGGATTCAACTTCAACCAATCAGTTGTAGATG--CAAA--CGGAAAGATTGTAC 171560 | | || || ||||| ||||||||||| || || ||| ||| || | | ||| Sbjct 405 CTTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATAC 346 Query 171561 CAACATGGGGAGATGTTCTTAACAGAGCAAACCTTGGAATGGAAGTTATGCATGAAAGAA 171620 | |||| ||| || ||||| | || || ||||| |||||||||||||||||| | | Sbjct 345 C----TGGGCTGATATTATTAACCGTGCTAATCTTGGTATGGAAGTTATGCATGAACGTA 290 Query 171621 ATGCACACAACTTCCCACTAGACCTAGCATCTGCTGA 171657 |||| ||||||||||| ||||||||||| ||| ||| Sbjct 289 ATGCTCACAACTTCCCTCTAGACCTAGCTGCTGTTGA 253 Score = 408 bits (452), Expect = 5e-109 Identities = 706/1026 (69%), Gaps = 21/1026 (2%) Strand=Plus/Plus Query 171807 GATGATTGGTTAAAGAGAGATCGTTTCGTATTCATCGGATGGTCTGGTCTTTTACTTTTA 171866 ||||| |||||| ||| || |||||||| || | || ||||| ||||| || || || Sbjct 34875 GATGACTGGTTACGGAGGGACCGTTTCGTTTTTGTAGGTTGGTCCGGTCTATTGCTCTTT 34934 Query 171867 CCTTGTGCTTACCTAGCAATCGGAGGTTGGTTCGTAGGAACTACTTTCGTGACCTCATGG 171926 |||||||| || | || ||||||||||||| ||| || || || || || |||||| Sbjct 34935 CCTTGTGCCTATTTTGCCGTCGGAGGTTGGTTTACAGGTACAACCTTTGTAACTTCATGG 34994 Query 171927 TACACACATGGTATTGCATCCTCATATCTTGAGGGAGCAAACTTTTTAACTGCAGCAGTA 171986 || || ||||| | ||| || ||| | || ||| ||||| ||||| || ||||| Sbjct 34995 TATACCCATGGATTGGCAAGTTCCTATTTGGAAGGATGCAACTTCTTAACCGCCGCAGTT 35054 Query 171987 TCAACACCTGGTGATGCTATGGGTCATAGTCTATTGTTCCTATGGGGACCTGAGGCACAA 172046 || || |||| | || | | | || | | ||||| |||||||| ||||| |||||| Sbjct 35055 TCGACTCCTGCTAATAGTTTAGCCCACTCTTTGTTGTTACTATGGGGCCCTGAAGCACAA 35114 Query 172047 GGAGATCTTGTACGATGGTTTCAATTAGGTGGACTATGGAACTTTGTAGCATTACATGGA 172106 |||||| || || |||| |||||||||||| || |||| ||||| || | || || Sbjct 35115 GGAGATTTTACTCGTTGGTGTCAATTAGGTGGTCTGTGGACTTTTGTTGCTCTCCACGGT 35174 Query 172107 GTCTTTGGACTCATAGGTTTCATGCTTAGACAGTTTGAGATTGCAGGACTTGTTGGGATA 172166 | || ||||| |||||||||||| | | || ||||| |||| || |||| | Sbjct 35175 GCTTTCGGACTAATAGGTTTCATGTTACGTCAATTTGAACTTGCTCGATCTGTTCAATTG 35234 Query 172167 CGTCCTTACAACGCACTAGCATTCTCAGCAGTTATTGCAGTATTCACGAGCATCTTTCTA 172226 || ||||| || ||| | |||||||| | ||||| || || | || || Sbjct 35235 CGACCTTATAATGCAATCGCATTCTCGGGCCCAATTGCTGTTTTTGTTTCTGTATTCCTG 35294 Query 172227 ATATATCCATTAGGTCAGCATAGTTGGTTCTTCGCACCTTCATTTGGTGTCGCAGCAATC 172286 || |||||| |||||||| | |||||||||| || ||| |||||||| ||||| || Sbjct 35295 ATTTATCCACTAGGTCAGTCTGGTTGGTTCTTTGCGCCTAGTTTTGGTGTAGCAGCTATA 35354 Query 172287 TTTCGTTATATTTTATTCATACAGGGTTTCCACAATATAACTCTTAATCCATTTCATATG 172346 ||||| | || |||| | || || || || ||| || | || |||||||||||| Sbjct 35355 TTTCGATTCATCCTATTTTTCCAAGGGTTTCATAATTGGACATTGAACCCATTTCATATG 35414 Query 172347 ATGGGTGTAGCAGGTATACTTGGTGGAGCATTACTATGTGCCATACATGGTGCAACAGTA 172406 ||||| || || || || | || | || | ||||| || || |||||||| || ||| Sbjct 35415 ATGGGAGTTGCGGGGGTATTGGGCGCTGCTCTGCTATGCGCTATTCATGGTGCTACCGTA 35474 Query 172407 CAGAACACATTGTATGAAGACACATCACAATACACTGAAGGTAAGATTCAATCTACAACT 172466 | || || || | ||| || || || | | | ||| |||| Sbjct 35475 GAAAATACCTTATTTGAGGA---------------TG--GGGATGGTGCAA-ATACA--- 35513 Query 172467 TTCAGAGCATTCGATCCTACACAGGAAGAAGAAACTTATAGTATGATTACTGCTAACAGA 172526 ||| | || || | || || || | |||||||||||| ||| | ||||||||| | Sbjct 35514 TTCCGTGCTTTTAACCCAACTCAAGCTGAAGAAACTTATTCAATGGTCACTGCTAACCGC 35573 Query 172527 TTCTGGTCACAGATATTTGGTATAGCATTTTCAAACAAAAGATTCTTACACTTCCTTATG 172586 || ||||| || || ||||| | || ||||| || ||| | | ||||| ||| ||||| Sbjct 35574 TTTTGGTCCCAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATG 35633 Query 172587 TTGTTCGTACCTGTCATGGGTATGTGGACATCATCTATAGGTATCGTAGGTCTTGCACTT 172646 || || ||||| || | ||| | |||| || | || | || ||||| || || Sbjct 35634 TTATTTGTACCAGTAACTGGTTTATGGATGAGTGCTCTTGGAGTAGTTGGTCTGGCCCTG 35693 Query 172647 AACCTCAGAGCATACGACTTTGTATCTCAAGAGATAAGAGCAGCAGAAGACCCAGAGTTT 172706 ||||| | || || ||||| || ||||| || || | ||||| ||||| || || ||| Sbjct 35694 AACCTACGTGCCTATGACTTCGTTTCTCAGGAAATCCGTGCAGCGGAAGATCCGGAATTT 35753 Query 172707 GAAACCTTCTACACTAAGAACATTCTTCTTAATGAAGGTATGAGAGCATGGATGTCATCT 172766 || || ||||| || || || ||||| | || |||||||| | || |||||| | || Sbjct 35754 GAGACTTTCTATACCAAAAATATTCTCTTAAACGAAGGTATTCGTGCTTGGATGGCGGCT 35813 Query 172767 GTCGATCAACCCCATGAGAACTTTGTGTTCCCAGAAGAAGTCTTGCCACGAGGCAACGCA 172826 ||||| || ||||| ||| || | ||||| || || || | || || || ||||| Sbjct 35814 CAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCCCGTGGAAACGCT 35873 Query 172827 CTATAA 172832 || ||| Sbjct 35874 CTTTAA 35879 >seq1 Length=29149675 Score = 127 bits (140), Expect = 2e-24 Identities = 150/201 (75%), Gaps = 8/201 (4%) Strand=Plus/Plus Query 171452 CCTGTAGTCTGTGTATGGTTAACCTCTATGGGTATCTGTACAATGGCATTCAACCTTAAC 171511 |||||||| || | ||||| ||| || ||||||| | | ||||| |||||| | || Sbjct 9383836 CCTGTAGTAGGTATCTGGTTCACCGCTTTGGGTATTAGCCCTATGGCTTTCAACTTAAAT 9383895 Query 171512 GGATTCAACTTCAACCAATCAGTTGTAGATG--CAAA--CGGAAAGATTGTACCAACATG 171567 || ||||| ||||||||||| || || ||| ||| || | | |||| || Sbjct 9383896 GGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATACC----TG 9383951 Query 171568 GGGAGATGTTCTTAACAGAGCAAACCTTGGAATGGAAGTTATGCATGAAAGAAATGCACA 171627 || ||| || ||||| | || || ||||| |||||||||||||||||| | ||||| || Sbjct 9383952 GGCTGATATTATTAACCGTGCTAATCTTGGTATGGAAGTTATGCATGAACGTAATGCTCA 9384011 Query 171628 CAACTTCCCACTAGACCTAGC 171648 ||||||||| ||||||||||| Sbjct 9384012 CAACTTCCCTCTAGACCTAGC 9384032 >seq7 Length=19226500 Score = 93.3 bits (102), Expect = 5e-14 Identities = 72/86 (84%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 171563 ACATGGGGAGATGTTCTTAACAGAGCAAACCTTGGAATGGAAGTTATGCATGAAAGAAAT 171622 || |||| ||| || ||||| | || || ||||| |||||||||||||||||| | ||| Sbjct 19048891 ACCTGGGCTGATATTATTAACCGTGCTAATCTTGGTATGGAAGTTATGCATGAACGTAAT 19048950 Query 171623 GCACACAACTTCCCACTAGACCTAGC 171648 || ||||||||||| ||||||||||| Sbjct 19048951 GCTCACAACTTCCCTCTAGACCTAGC 19048976 >seq5 Length=28023477 Score = 93.3 bits (102), Expect = 5e-14 Identities = 99/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 171807 GATGATTGGTTAAAGAGAGATCGTTTCGTATTCATCGGATGGTCTGGTCTTTTACTTTTA 171866 ||||| |||||| ||| || |||||||| || | || ||||| ||||| || || || Sbjct 18678851 GATGACTGGTTACGGAGGGACCGTTTCGTTTTTGTAGGTTGGTCCGGTCTATTGCTCTTT 18678792 Query 171867 CCTTGTGCTTACCTAGCAATCGGAGGTTGGTTCGTAGGAACTACTTTCGTGACCTCATGG 171926 |||||||| || | || ||||||||||||| ||| || || || || || |||||| Sbjct 18678791 CCTTGTGCCTATTTTGCCGTCGGAGGTTGGTTTACAGGTACAACCTTTGTAACTTCATGG 18678732 Query 171927 TACACACATGG 171937 || || ||||| Sbjct 18678731 TATACCCATGG 18678721 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570267445611600