Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20sativus_20[refseq_20GCF_5F000004075.2_202014-10-27] 190 sequences; 195,669,205 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq3 143 3e-29 >seq3 Length=39782674 Score = 143 bits (158), Expect = 3e-29 Identities = 305/449 (68%), Gaps = 30/449 (7%) Strand=Plus/Minus Query 21185 TTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGAT 21244 |||||||| || | ||||||||| || || ||||| ||||| |||| ||| || || | Sbjct 22913702 TTTTGATATTCCCCAACTCTTTTCTCAAAGAAATTAGTCTTCCCTTGCAAGGAAATCAAC 22913643 Query 21245 TCCATAAAATCAAATGGATTTT-CAGATTTAAATATTTTATTACAACCCAGTTCTGATAA 21303 ||||| ||||||||||||||| || ||| | ||||| | | | |||| | || | Sbjct 22913642 TCCATCCAATCAAATGGATTTTGCACATTGTAG-ATTTTGTCATACCCCAATGCTCCAAC 22913584 Query 21304 TAATCTATCTGCTACAAATTCTATATATTGACACATTAATTCACAATTCATACCGATCAA 21363 ||||||||||| |||||||| || ||||| | ||| | || | |||||| || | | Sbjct 22913583 CAATCTATCTGCCACAAATTCAATGTATTGGCTCATAAGGTCTCCATTCATTCCAACTAG 22913524 Query 21364 TTTTACAGGAAGAGCTTTTGTCAAAAAAGATTTT----TCTATAGAGACGGCTTCAACAA 21419 || || | ||| | || ||| || || |||||| || || || | || Sbjct 22913523 AGCCACCGGCAAAGCAT----CACAAACGAATTCCCTCTCTATATTCACAGCCTCCATAA 22913468 Query 21420 TTATATTTATTATCCTAGATGTACTAGGGGGATACAATAA-TTGTTTAA--------ACA 21470 || | | | || ||| || || |||| || | || ||| Sbjct 22913467 CAATCTCCTTCA--CTCGATCCAC-------ATTCAATTTCTTCCTCAACAACGAATACA 22913417 Query 21471 TCAAACATGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATG 21530 ||||||||||||||||||||| | ||||||||| || || || || || || |||| Sbjct 22913416 ACAAACATGCAAAATCACAATGAAGACCTTCATCTCTTGAAATCAACTCGTTTGAGAATG 22913357 Query 21531 TTAAACCGGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCT-CCTGAA 21589 ||| || |||||||| || | ||||| ||||| || || || || | || ||||| Sbjct 22913356 TTAGTCCAGGCATTAACCCACGTTTTTTCAACCAGAAAATAGA-ACAGAAACTACCTGAG 22913298 Query 21590 AAGAAAATGCCCTCAACGGCAGCAAATGC 21618 |||||||| |||||||| ||||||||| Sbjct 22913297 AAGAAAATTCCCTCAACACAAGCAAATGC 22913269 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531899536735600