Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20sativus_20[refseq_20GCF_5F000004075.2_202014-10-27] 190 sequences; 195,669,205 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq3 226 4e-54 seq6 86.0 8e-12 >seq3 Length=39782674 Score = 226 bits (250), Expect = 4e-54 Identities = 581/882 (66%), Gaps = 32/882 (4%) Strand=Plus/Minus Query 33013 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTT 33072 ||||| ||||| || || | ||| || || |||||||| || |||| ||| || || Sbjct 22913702 TTTTGATATTCCCCAACTCTTTTCTCAAAGAAATTAGTCTTCCCTTGCAAGGAAATCAAC 22913643 Query 33073 TCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATC 33132 ||||| ||||||| ||||| ||||| || ||||| | | | |||||| | || | Sbjct 22913642 TCCATCCAATCAAATGGATTTTGCACATTGTAGATTTTGTCATACCCCAATGCTCCAACC 22913583 Query 33133 AATCTATCCGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGT 33192 |||||||| || || ||||| || ||| |||| | || | ||||||||| | || Sbjct 22913582 AATCTATCTGCCACAAATTCAATGTATTGGCTCATAAGGTCTCCATTCATTCCAACTAGA 22913523 Query 33193 TTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATAATA 33252 || || | ||| || || ||||| || || || || || |||| | Sbjct 22913522 GCCACCGGCAAAGCATCACAAACGAATTCCCTCTCTATATTCACAGCCTCC---ATAACA 22913466 Query 33253 GATCTAACGGTTTCTTCACTCGGTGGATGCAATAAATGTTT-------------AAACAT 33299 |||| ||||||||| | | || | ||| | | | ||| Sbjct 22913465 -ATCTC-------CTTCACTCGATCCA--CATTCAATTTCTTCCTCAACAACGAATACAA 22913416 Query 33300 CAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGT 33359 ||||||||| ||||| || || ||||| || ||||| ||| | ||||| || || || Sbjct 22913415 CAAACATGCAAAATCACAATGAAGACCTTCATCTCTTGAAATCAACTCGTTTGAGAATGT 22913356 Query 33360 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAA 33419 ||||| ||||||| ||||| ||||| | ||| || || ||| ||| || || || Sbjct 22913355 TAGTCCAGGCATTAACCCACGTTTTTTCAACCAGAAAATAGAACAGAAACTACCTGAGAA 22913296 Query 33420 GAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATA--AC-CGGCGCTGTC 33476 ||| ||||| || || |||||| || | || | ||| || | || | | |||||| Sbjct 22913295 GAAAATTCCCTCAACACAAGCAAATGCCAAAATCCGCTCAGCAAATGACTCCGTGCTGTC 22913236 Query 33477 ATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGC 33536 | |||||||| ||||||||||||||||| || ||||| || | || || || || Sbjct 22913235 A---ATCCACTTCAACGCCCAATCGGCCTTCTTCTTGACACAGGGGACAGTATCAATAGC 22913179 Query 33537 ATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATA 33596 || ||| | || || ||||| |||||| | ||||| |||| | ||||||||| Sbjct 22913178 ATGAAACAAGCGATTCTTCTCATTCGAATCTTTGATGTAAGTTTCGAGGAGAAGACTATA 22913119 Query 33597 CATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGT 33656 ||| || ||||||||||| || || || || || || |||||||| ||| | || | Sbjct 22913118 CATCTCGGAATGAATGTTCTCGATAGCAATTTGGAAACCGTAGAAGGCTCTGACTTCAGC 22913059 Query 33657 AATCTGTACTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGC 33716 | || ||||| | || || | || | || || || || || ||| ||| Sbjct 22913058 GACTTGAACTTCCTTCATGAACCGACCGGCAAGGTTCTCCAAGACGATACCATCAGAGGC 22912999 Query 33717 TGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCA 33776 || || || || | || || | || |||| || ||||| | |||| || ||| Sbjct 22912998 AGCGAAGAAGGCAAGGACGTGAGTGATGAAATGCTTCTCGTCGGAAGTTAAGGAATCCCA 22912939 Query 33777 ATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTT 33836 || | |||| ||| | ||| || ||||| | ||||| || || || || ||||| Sbjct 22912938 ATGGCGAGTGTCTTGAGAGAGATCGACCTCTTCGGCGGTCCAGAAGGAGGCTTCGGCCTT 22912879 Query 33837 TTTATACATGTTCCAGATGTCATAATATTGGATTGGGAAAAT 33878 || ||||| | |||||| | |||||| || ||||| || Sbjct 22912878 CTTGTACATCTCCCAGATTTGGGGATATTGAATGGGGAACAT 22912837 >seq6 Length=29076228 Score = 86.0 bits (94), Expect = 8e-12 Identities = 152/222 (68%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 63371 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 63430 |||||| ||||| | |||| ||| || | ||| | || | || ||| || | |||||| Sbjct 22590412 TCCTCCTTGATCAACATATCGAGCAGTATCATTGAATACCCGCAGCATAGGCAAAATACC 22590353 Query 63431 GTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 63490 || ||| | ||||| || || ||||| || || ||||||||||||| || || Sbjct 22590352 ATTAGATGTCCCATTTGTTCCACGAATATAACTACCCATGGCACGAATATTGTGGATGGA 22590293 Query 63491 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGAT 63550 | ||| || || || ||| || ||| | || || |||||| || ||||| || Sbjct 22590292 AACACCAATACCACCAGCCGACTTGCTGATAACAGCACACTCTTTTAAGGTATCATATAT 22590233 Query 63551 ACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCT 63592 || ||||| ||||| || ||||| | || |||||||| Sbjct 22590232 TCCTTCTATACTATCCTCCTTCATGCATATAAGGAAACAGCT 22590191 Score = 84.2 bits (92), Expect = 3e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 63612 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 63671 ||||| | ||||| | |||||||||||| || |||||||| || || | | | Sbjct 22590056 GTTCCAGAGTTAAAAAGGGTAGGAGAAGCATGAGTAAACCAACGTTGTGACATTGTGTGA 22589997 Query 63672 TACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 63731 || || | |||||| || || ||||| || ||||| || || || || | ||| ||| Sbjct 22589996 TAAGTTTTAATAGCAGAATCAATATCATCTTTGTGAATACCAACGGCAACCCTCATCAAC 22589937 Query 63732 ATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAA 63791 ||||| || || || || || | ||| | | |||||| | ||| || |||||| | Sbjct 22589936 ATGTGTTGGGGCCTCTCCACAACCTTCCCCTGAACTTTCAAGAGGTATGACCTTTCCAGA 22589877 Query 63792 GTTTTAAAACCAAA 63805 ||||| || ||||| Sbjct 22589876 GTTTTGAAGCCAAA 22589863 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622945720500400