Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20sativus_20[refseq_20GCF_5F000004075.2_202014-10-27] 190 sequences; 195,669,205 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq3 163 7e-35 seq2 102 2e-16 >seq3 Length=39782674 Score = 163 bits (180), Expect = 7e-35 Identities = 360/525 (69%), Gaps = 21/525 (4%) Strand=Plus/Plus Query 22435 AAGAATAAGGCAGATTGGGCGCTGAAATGGATGAACAATGAACGT--TCATTCGCGGAAC 22492 ||||| ||||| ||||||||| |||| ||||| ||| | ||| ||||| || || | Sbjct 22913203 AAGAAGAAGGCCGATTGGGCGTTGAAGTGGATTGACA--GCACGGAGTCATTTGCTGAGC 22913260 Query 22493 GTCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCAATCT 22552 | || | ||||||||| ||||| || |||||||| || || || ||| | || | Sbjct 22913261 GGATTTTGGCATTTGCTTGTGTTGAGGGAATTTTCTTCTCAGGTAGTTTCTGTTCTATTT 22913320 Query 22553 TTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATTAGCC 22612 | ||| | |||||||||| | ||||| || ||||| || ||||| ||||| ||| Sbjct 22913321 TCTGGTTGAAAAAACGTGGGTTAATGCCTGGACTAACATTCTCAAACGAGTTGATTTCAA 22913380 Query 22613 GAGATGAGGGTCTTCATACCGATTTTGCGTGTATGCTATATCGGAATCATATCATTCATA 22672 ||||||| ||||||||| |||||||| ||| || | ||| | | | | | | | Sbjct 22913381 GAGATGAAGGTCTTCATTGTGATTTTGCATGTTTGTTGTATTCG--TTGT-TGAGGAAGA 22913437 Query 22673 AACTTCCATATGAAACT-GTACTTGATATTATTACAAATGCAGTTGAACTTGAACGTCTA 22731 || || || || | | || || ||| ||| | || || | | || | | Sbjct 22913438 AA-TTGAATGTGGATCGAGTGAAGGAGATTGTTATGGAGGCTGTGAATATAGAGAGGGAA 22913496 Query 22732 TTTATTTGCGAGGCGTTACCAGTAAGTCTCATTGGTATCAATGCCGAATCAATGAGTACA 22791 || |||| || || || || || ||| |||| || |||| || ||||| | Sbjct 22913497 TTCGTTTGTGATGCTTTGCCGGTGGCTCTAGTTGGAATGAATGGAGACCTTATGAGCCAA 22913556 Query 22792 TATATTAAATTTGTTGCAGATCGTCTATTAATTT---CACTCGGTTATG-CAAAGCAT-T 22846 || ||| ||||||| |||||| | ||| || || | || |||| |||| || | Sbjct 22913557 TACATTGAATTTGTGGCAGATAG---ATTGGTTGGAGCATTGGGGTATGACAAA--ATCT 22913611 Query 22847 ATAACGTCGTTAATCCATTTGAATGGATGGAACTTATTTCACTTG-AAGGAAAGACCAAT 22905 | || || ||||||||||| |||||||| | ||||| |||| |||| ||||| ||| Sbjct 22913612 ACAATGTGCAAAATCCATTTGATTGGATGGAGTTGATTTC-CTTGCAAGGGAAGACTAAT 22913670 Query 22906 TTCTTCGAAAAAAGAGTTGGTGAATACCAAAAAGCAGGTGTTATG 22950 ||||| || ||||||||||| ||||| ||||| ||| ||| ||| Sbjct 22913671 TTCTTTGAGAAAAGAGTTGGGGAATATCAAAAGGCATCTGTGATG 22913715 >seq2 Length=23174626 Score = 102 bits (112), Expect = 2e-16 Identities = 80/96 (83%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 111729 TCATGCCAAATGTATCAGCGATCTGCTGATATTGGTCTTGGTGTTCCGTTTAATATTGCA 111788 ||||| |||||||||||||| |||||||| || || ||||||||||| |||||||||||| Sbjct 12089937 TCATGTCAAATGTATCAGCGTTCTGCTGACATGGGCCTTGGTGTTCCATTTAATATTGCA 12089878 Query 111789 AGTTACGCACTACTTACTTGCTTAATCGCTCAtttt 111824 ||||| || || |||||| | || |||||| || Sbjct 12089877 TCATACGCTCTTCTGACTTGCATGATTGCTCATGTT 12089842 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303350427148580