Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20sativus_20[refseq_20GCF_5F000004075.2_202014-10-27] 190 sequences; 195,669,205 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq3 109 5e-19 seq5 89.7 4e-13 >seq3 Length=39782674 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | ||||| ||||| ||||| || ||| | |||||| | ||||| ||| | Sbjct 19995868 ATGCAAATTTTTGTGAAAACCTTAACCGGGAAAACAATTACCTTGGAAGTGGAGAGCTCT 19995927 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || || || || | || ||| ||||| || || || || || || || || ||| Sbjct 19995928 GATACAATTGATAATGTGAAAGCTAAGATCCAAGATAAGGAGGGTATTCCACCGGACCAA 19995987 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| |||||| | || ||||| || ||||||| ||| | | ||||||||| Sbjct 19995988 CAGAGGTTGATTTTTGCTGGTAAGCAGCTTGAAGATGGCAGGACTCTGGCAGATTATAAC 19996047 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGA 24218 |||||||| ||||| || | ||||||||| | ||||| | || ||| Sbjct 19996048 ATTCAAAAGGAATCAACGTTGCATTTAGTGCTCCGATTGCGCGGTGGA 19996095 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | ||||| || || | ||||| ||| | |||||| | || || || Sbjct 19995640 ATGCAAATATTTGTGAAGACCCTTACTGGCAAAACCATTACCCTTGAGGTGGAAAGTTCT 19995699 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || ||||| || | ||||| || ||| ||||| ||||| ||||| || || ||| Sbjct 19995700 GATACCATTGACAATGTCAAGGCTAAAATTCAAGACAAGGAAGGTATACCACCTGACCAA 19995759 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 |||||||| |||| | || ||||| ||||| |||| ||| || || || || Sbjct 19995760 CAGAGACTTATTTTTGCTGGTAAGCAGCTCGAGGATGGTCGAACTCTCGCTGACTACAAT 19995819 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGT 24199 ||||| || |||||||| | ||||| || Sbjct 19995820 ATTCAGAAGGAATCTACTCTGCATTTGGT 19995848 >seq5 Length=28023477 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || ||||| |||| || || | || || ||||||||||| | | Sbjct 21959967 ATGCAGATCTTCGTGAAAACCCTAACGGGTAAGACCATCACTCTCGAAGTCGAGAGCTCC 21960026 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || |||||||| | ||||| |||||| ||||| ||||| || ||||| || || Sbjct 21960027 GATACCATCGACAATGTCAAGGCAAAGATCCAGGACAAGGAAGGAATCCCTCCGGACCAG 21960086 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| | |||||| || ||| ||||| || || || | | ||| | ||| || ||| Sbjct 21960087 CAGCGTTTGATTTTCGCCGGAAAGCAGCTTGAGGACGGCCGAACACTAGCCGACTACAAC 21960146 Query 24171 ATTCAAAAAGAATCTAC 24187 ||||| || ||||| || Sbjct 21960147 ATTCAGAAGGAATCCAC 21960163 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429935004429450